Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03790 ATGGCAAGTCAAAGAATTGGAGAGCTTGATTTTTCTGAGGCAGAACATTATGGAATTCATCATAGGATTAACAATCCTTCTTCAAGCTTAATGAATGAAGGATCTGGTTTTGATTTTGGGGAGCTAGAAGAAGCAATAGTTCTGCAAGGAATTAAGAGTAGAAATGATGAAACAAAAGCATCTTTTTTCACAGCCAAACCTGCTTCTGCTACACTGGAAATGTTCCCTTCTTGGCCAATGAGATTCCACCAATCCTCAACAGGAGGGAATAAATCAGGAGGGGAAAGCAGTGATTCAGCACTATCAAGCAAAAATGAGAATCCATTTGAATCAGAATCATCACCATTAAGTTGTAAAAAAGCATCTTCTTCATTTTCATCAGAACAAAACAATACTAATAATCAGCAGCTACAGCAACAACAGAATATGATAACAAATGATGCTATAAGAACAGGCTCTTCATCACAGAATCAATCAGTAGCAAAAGAAAAGTTACAGAAAAAGGGAGGTGGTTCAACATCAGATAAGCCACTTGATGCAAAGACATTGAGGCGTTTGGCACAAAACAGAGAAGCTGCAAGAAAAAGTCGTCTAAGGAAAAAGGCTTATGTGCAACAACTAGAGTCAAGTAGATTAAAGCTTGCACAATTGGAACAAGACCTTCAAAGAGCACGCTCTCAGGGTATGTTCATGGATTGGAATGGTGGTGTTGGAGGCAATATAAGTTCTGGTGCAATGTTTGACATGGAATATGCAAGATGGTTAGAAGATGACAACCGTTTATTAACGGAGTTAAGAAACGGATTACAAGCGGCGTTATCAGATAATGAAATGAGAGTAATGGTGGATGGGTATTTATGTCATTATGATCAAATATTTAGAGTGAAGAGTGTCACCGCTAAATCAGACGTGTTTCATCTTATCAATGGCATGTGGACTTCTCAAGCTGAACGTTGTTTCCTTTGGATTGGTGGTTTTAGACCCTCAGAAATTATCATGATGTTAATCCAACAATTAGAGCCACTAGCTGAACAGCAAATAATGGGAATGTATGGATTAAGGCATTCATCACAGCAAGCAGAAGAAGCACTCTCTCAAGGACTTGACCAATTGCAACAATCTCTTGTTGATACCATTGCTGGAGGACCCCTTGTTGATGGTGTTCAACAAATGGTTGTTGCCATGGGTAAACTTTCTAATCTTGAAGGATTTCTTCGCCAGGCTGATAATTTGAGGCAACAAACTCTTCACCAATTGTGTCGATTACTCACACTTCGTCAAGCAGCACGCTCTTTTCTTGTCATTGGAGAGTACTATGGGCGACTTCGAGCCCTTAGTTCTCTGTGGTCATCAAGACCACGAGAGAACATGATGAGTGATGATAACTCATGCCAAACAACTACAGACATGCAAATGGTTCAACCTTCTCAGAATCATTTCTCCAATTTCTGA 1452 0.3946 MASQRIGELDFSEAEHYGIHHRINNPSSSLMNEGSGFDFGELEEAIVLQGIKSRNDETKASFFTAKPASATLEMFPSWPMRFHQSSTGGNKSGGESSDSALSSKNENPFESESSPLSCKKASSSFSSEQNNTNNQQLQQQQNMITNDAIRTGSSSQNQSVAKEKLQKKGGGSTSDKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQDLQRARSQGMFMDWNGGVGGNISSGAMFDMEYARWLEDDNRLLTELRNGLQAALSDNEMRVMVDGYLCHYDQIFRVKSVTAKSDVFHLINGMWTSQAERCFLWIGGFRPSEIIMMLIQQLEPLAEQQIMGMYGLRHSSQQAEEALSQGLDQLQQSLVDTIAGGPLVDGVQQMVVAMGKLSNLEGFLRQADNLRQQTLHQLCRLLTLRQAARSFLVIGEYYGRLRALSSLWSSRPRENMMSDDNSCQTTTDMQMVQPSQNHFSNF 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03790 483 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 184 199 IPR004827 GO:0003700|GO:0006355
Trre11g03790 483 Gene3D - 180 229 - -
Trre11g03790 483 SMART brlzneu 177 243 IPR004827 GO:0003700|GO:0006355
Trre11g03790 483 PANTHER TRANSCRIPTION FACTOR TGA9 112 455 - -
Trre11g03790 483 Pfam Seed dormancy control 262 335 IPR025422 GO:0006351|GO:0043565
Trre11g03790 483 ProSiteProfiles DOG1 domain profile. 244 452 IPR025422 GO:0006351|GO:0043565
Trre11g03790 483 MobiDBLite consensus disorder prediction 80 139 - -
Trre11g03790 483 Coils Coil 200 227 - -
Trre11g03790 483 CDD bZIP_HBP1b-like 181 231 - -
Trre11g03790 483 FunFam BZIP family transcription factor 180 229 - -
Trre11g03790 483 Pfam bZIP transcription factor 180 221 IPR004827 GO:0003700|GO:0006355
Trre11g03790 483 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 179 223 IPR004827 GO:0003700|GO:0006355
Trre11g03790 483 MobiDBLite consensus disorder prediction 151 182 - -
Trre11g03790 483 SUPERFAMILY Leucine zipper domain 181 222 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03790 Trre-Chr11 51213765 51221262 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03790 137 483 bZIP Transcription Factor Family AT1G08320 68.768 1.08e-178 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre11g03790 DOG1 2.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03790 K14431 - gmx:100775461 671.389