Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03789 ATGGCAAGTCAAAGAATTGGAGAGCTTGATTTTTCTGAGGCAGAACATTATGGAATTCATCATAGGATTAACAATCCTTCTTCAAGCTTAATGAATGAAGGATCTGGTTTTGATTTTGGGGAGCTAGAAGAAGCAATAGTTCTGCAAGGAATTAAGAGTAGAAATGATGAAACAAAAGCATCTTTTTTCACAGCCAAACCTGCTTCTGCTACACTGGAAATGTTCCCTTCTTGGCCAATGAGATTCCACCAATCCTCAACAGGAGGGAATAAATCAGGAGGGGAAAGCAGTGATTCAGCACTATCAAGCAAAAATGAGAATCCATTTGAATCAGAATCATCACCATTAAGTTGTAAAAAAGCATCTTCTTCATTTTCATCAGAACAAAACAATACTAATAATCAGCAGCTACAGCAACAACAGAATATGATAACAAATGATGCTATAAGAACAGGCTCTTCATCACAGAATCAATCAGTAGCAAAAGAAAAGTTACAGAAAAAGGGAGGTGGTTCAACATCAGATAAGCCACTTGATGCAAAGACATTGAGGCGTTTGGCACAAAACAGAGAAGCTGCAAGAAAAAGTCGTCTAAGGAAAAAGGCTTATGTGCAACAACTAGAGTCAAGTAGATTAAAGCTTGCACAATTGGAACAAGACCTTCAAAGAGCACGCTCTCAGGGTATGTTCATGGATTGGAATGGTGGTGTTGGAGGCAATATAAGTTCTGGAGGTGCAATGTTTGACATGGAATATGCAAGATGGTTAGAAGATGACAACCGTTTATTAACGGAGTTAAGAAACGGATTACAAGCGGCGTTATCAGATAATGAAATGAGAGTAATGGTGGATGGGTATTTATGTCATTATGATCAAATATTTAGAGTGAAGAGTGTCACCGCTAAATCAGACGTGTTTCATCTTATCAATGGCATGTGGACTTCTCAAGCTGAACGTTGTTTCCTTTGGATTGGTGGTTTTAGACCCTCAGAAATTATCATGATGTTAATCCAACAATTAGAGCCACTAGCTGAACAGCAAATAATGGGAATGTATGGATTAAGGCATTCATCACAGCAAGCAGAAGAAGCACTCTCTCAAGGACTTGACCAATTGCAACAATCTCTTGTTGATACCATTGCTGGAGGACCCCTTGTTGATGGTGTTCAACAAATGGTTGTTGCCATGGGTAAACTTTCTAATCTTGAAGGATTTCTTCGCCAGGCTGATAATTTGAGGCAACAAACTCTTCACCAATTGTGTCGATTACTCACACTTCGTCAAGCAGCACGCTCTTTTCTTGTCATTGGAGAGTACTATGGGCGACTTCGAGCCCTTAGTTCTCTGTGGTCATCAAGACCACGAGAGAACATGATGAGTGATGATAACTCATGCCAAACAACTACAGACATGCAAATGGTTCAACCTTCTCAGAATCATTTCTCCAATTTCTGA 1455 0.3952 MASQRIGELDFSEAEHYGIHHRINNPSSSLMNEGSGFDFGELEEAIVLQGIKSRNDETKASFFTAKPASATLEMFPSWPMRFHQSSTGGNKSGGESSDSALSSKNENPFESESSPLSCKKASSSFSSEQNNTNNQQLQQQQNMITNDAIRTGSSSQNQSVAKEKLQKKGGGSTSDKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQDLQRARSQGMFMDWNGGVGGNISSGGAMFDMEYARWLEDDNRLLTELRNGLQAALSDNEMRVMVDGYLCHYDQIFRVKSVTAKSDVFHLINGMWTSQAERCFLWIGGFRPSEIIMMLIQQLEPLAEQQIMGMYGLRHSSQQAEEALSQGLDQLQQSLVDTIAGGPLVDGVQQMVVAMGKLSNLEGFLRQADNLRQQTLHQLCRLLTLRQAARSFLVIGEYYGRLRALSSLWSSRPRENMMSDDNSCQTTTDMQMVQPSQNHFSNF 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03789 484 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 184 199 IPR004827 GO:0003700|GO:0006355
Trre11g03789 484 Gene3D - 180 229 - -
Trre11g03789 484 SMART brlzneu 177 243 IPR004827 GO:0003700|GO:0006355
Trre11g03789 484 MobiDBLite consensus disorder prediction 80 139 - -
Trre11g03789 484 Coils Coil 200 227 - -
Trre11g03789 484 CDD bZIP_HBP1b-like 181 231 - -
Trre11g03789 484 FunFam BZIP family transcription factor 180 229 - -
Trre11g03789 484 Pfam bZIP transcription factor 180 221 IPR004827 GO:0003700|GO:0006355
Trre11g03789 484 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 179 223 IPR004827 GO:0003700|GO:0006355
Trre11g03789 484 MobiDBLite consensus disorder prediction 151 182 - -
Trre11g03789 484 PANTHER TRANSCRIPTION FACTOR TGA9 112 456 - -
Trre11g03789 484 Pfam Seed dormancy control 263 336 IPR025422 GO:0006351|GO:0043565
Trre11g03789 484 ProSiteProfiles DOG1 domain profile. 245 453 IPR025422 GO:0006351|GO:0043565
Trre11g03789 484 SUPERFAMILY Leucine zipper domain 181 222 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03789 Trre-Chr11 51213765 51221262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03789 137 484 bZIP Transcription Factor Family AT1G08320 68.768 1.57e-180 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre11g03789 DOG1 2.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03789 K14431 - gmx:100775461 671.003