Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03788 ATGGCTCTACAAGTGCAACATTTGGATCAAGATGTTCAATTGCAAGAACAAGAAGAAGCTCCAATTGGTCAACCAAGCAAACAAAACTCAATACTCTCACTTACCCTTGATGAGTTCCAATGCAAGAGTGGAAAGAGTTTTGGTTCCCTCAACATGGATGAGTTCATAGCTAGTATTTGGAACTCCAATGATGAAGCTACTACTATTACTACTACTACTCAAACTCAGAAGAATACTAAAAATGTTGCAACAACAGAAGAAAATTCATTTTCTGTCCCTCCACCAATTTGCAAGAAAACTGTTGATGAAGTTTGGTCTGAGATTCATAAAAATACATCACAATTCAAAGAAGAAAATAACCTTCAAAGAAATGAAACTCTTATGAAGCAACAAACACTTGGAGAATTGACTTTGGAAGATTTCTTAGTTAAAGCTGGTGTTGTACAACAATCATCATCATATCCATTTCAGAATCATAGTGGCAATGTTTTGAGGAATGCGACACCGATGAATAATGTTGCAAGTTATGGTTTGAGTCCTTCAATGGGAATGGGATATTCTAATCAATGTGTGTCGAGTAATGGTCTCGCAACATACCAAATGCTGTCACAGAATAATAACTTAGGAGTGAAGGATCATGTGGCTGAATCAAGTGGGTGTAGTAATAGGAAGAGGATAATTAATGGTCCTCCTGATGTTGTTGTGGAACGAAGGCAACGTAGAATGTTGAAAAATCGAGAATCTGCTGCTCGTTCTCGTGCAAGAAGACAGGCATATACTGTGGAGCTAGAGGCTGAGCTGAATCTGCTAACAGAAGAGAATGAAAAGCTGAAACAAGTTCTGGCTGAAGCCGAGCGCAAGAGGAAACAAGAGCTTTTACAAAGGAAGCATCCAACAAAGACTCAAAAGGGGACAGAAAAATTAAGAGCAATAAGAAGGCCTATAAGTGCAATCTGGTGA 960 0.3854 MALQVQHLDQDVQLQEQEEAPIGQPSKQNSILSLTLDEFQCKSGKSFGSLNMDEFIASIWNSNDEATTITTTTQTQKNTKNVATTEENSFSVPPPICKKTVDEVWSEIHKNTSQFKEENNLQRNETLMKQQTLGELTLEDFLVKAGVVQQSSSYPFQNHSGNVLRNATPMNNVASYGLSPSMGMGYSNQCVSSNGLATYQMLSQNNNLGVKDHVAESSGCSNRKRIINGPPDVVVERRQRRMLKNRESAARSRARRQAYTVELEAELNLLTEENEKLKQVLAEAERKRKQELLQRKHPTKTQKGTEKLRAIRRPISAIW 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03788 319 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 240 255 IPR004827 GO:0003700|GO:0006355
Trre11g03788 319 SUPERFAMILY Leucine zipper domain 237 286 IPR046347 GO:0003700|GO:0006355
Trre11g03788 319 SMART brlzneu 233 294 IPR004827 GO:0003700|GO:0006355
Trre11g03788 319 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 235 287 IPR004827 GO:0003700|GO:0006355
Trre11g03788 319 Gene3D - 235 291 - -
Trre11g03788 319 Coils Coil 260 294 - -
Trre11g03788 319 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 27 290 IPR043452 GO:0003700|GO:0045893
Trre11g03788 319 Pfam bZIP transcription factor 237 289 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03788 Trre-Chr11 51206051 51207732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03788 18 319 bZIP Transcription Factor Family AT3G44460 45.938 2.61e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre11g03788 bZIP_1 2.4e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03788 K14432 - gmx:100820370 326.635