Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03759 ATGGCTGATCAAGATACTGAGAGAAGAAACACCATAAACAATCATGAATCTTCCTTAGCTATTGCTCGACACTCTCGGGGGCATTCAATTGGCTCTGAGAATAACCCAAATGAATTATATTCGCACTTGCTTGAGATAGCTAGTGGAGCTGATGTGTTGAAGAGTGTTGTTGACTACGCTCATCAAAGAGGTAGGGGAATATGCCTTCTCGGTGGAAGCGGATTAGTGGCGCAAGTCACACTTCATCTATCCAATGGCAAAGTTGGAACCTTTTGTGGAATATTCCAGATTCTTTCAATATCTGGAAAAATTCTCCCGCCGCCGGCACGAGTGAGTTTGGAAGGATTGACGGTATGCTTGTTAGACACTAAAGGACAAGTGGTTATGGGGGATGTGATTTCTCCTCTGGTGGCTTTTGGCCCAGTGAAGTTGACAACTGCTTCTTTTGCAAACATTGCTTATGAAAATCTGCCTTAG 477 0.4382 MADQDTERRNTINNHESSLAIARHSRGHSIGSENNPNELYSHLLEIASGADVLKSVVDYAHQRGRGICLLGGSGLVAQVTLHLSNGKVGTFCGIFQILSISGKILPPPARVSLEGLTVCLLDTKGQVVMGDVISPLVAFGPVKLTTASFANIAYENLP 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03759 158 ProSiteProfiles PPC domain profile profile. 36 158 IPR005175 -
Trre11g03759 158 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 17 158 IPR014476 GO:0003680
Trre11g03759 158 Pfam Plants and Prokaryotes Conserved (PCC) domain 42 150 IPR005175 -
Trre11g03759 158 SUPERFAMILY AF0104/ALDC/Ptd012-like 37 157 - -
Trre11g03759 158 CDD DUF296 42 149 IPR005175 -
Trre11g03759 158 Gene3D - 41 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03759 Trre-Chr11 50869098 50869574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03759 3 158 AT-hook Motif Nuclear Localized (AHL) Family AT1G76500 39.888 1.43e-30 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03759 - - pda:103722898 136.732