LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre11g03751	ATGGACCCATGGCTCGACGATCTCACCGACGACCTTCAAAGCATAAGTTTCGCCTCCACAACAACCACCGCCGGCGCCGACATCAAACGAAGCACAAGCTTTGGTTCCACAACAACCGCCTCAACTTCCGCTCATCTCTCAACAAGATCCCTAAATCCTCCAATCACTAAACATCACGGTCCTTTATCCGACCCTTGTTGGTCAGCCATTCATCGGATCCGATCAGTATCACCTTCTCGTCATATCCTTCCTTCTGACCTTCGATTCTCTCGCCGTCTCGGTTCCGGTGATATTAGTTCTGTTTATCTTGCCGAACTTAACGACGATGGACAAATTCCGGCGATGTTTGCGGCGAAAGTGATGGATAAGAAGGAGTTAGTTAGTAGAAGTAAAGAAGGAAGAGCGAAAACGGAGAGAGAAATACTTGAATCTCTTGATCATCCTTTTTTGCCTACTCTTTATGCTACAATAGATGCTTCGAAATGGCTTTGTCTTTTGACGGAGTTTTGTCCCGGCGGCGATCTTCATGTTCTCCGGCAACGGCAACAAAACAAACGGTTCTCTGAATCTGCTGTCAGATTCTATGCATCAGAGGTGTTGATGGCACTTGAATACCTTCATATGCTGGGAATTGTATACCGTGATCTCAAGCCGGAGAATGTGTTAGTAAGATCAGATGGCCATATCATGCTCACAGATTTTGATCTCTCATTAAAATGTGATGCTGATTCAACACCAGCCCAGATAATAATCTCAAGTCAAAACTCTCCACAAGTAATCCCACAAAAAAATCCCCACACTGGATCCTCTCAAATCGCCTCTTCTTCATGCATACTACCTAATTGTATTGTCCCAGCAGTGTCTTGTTTCCAACCAAAACGCAAACGAAAGAAGAAACAAAACCAGCTTAATGGGCCTGAATTTGTTGCTGAGCCCATTGATGTTCGATCCATGTCGTTTGTTGGGACCCATGAATACTTGGCTCCTGAGATAGTGTCTGGTGAAGGACATGGTAGTGCTGTGGATTGGTGGACCTTAGGAATATTTATATTCGAATTATTTTATGGTGTCACACCTTTTAGAGGCTTGGATAATGAATTAACTTTAGCAAATATTGTGGCTCGAGCTCTGGAGTTCCCAAAAGAACCCACCGTGCCAGCCACGGCAAAAGATCTTATCTCACAGTTATTGGTTAAGGATCCAGCTAGAAGACTTGGATCAATAATGGGGGCTTCTACTATCAAACACCACTCGTTTTTTCAAGGTGTGAATTGGGCATTGTTAAGGTGTACAACTCCACCTTATGTTCCACCACCTTATACTAAAGATGATTTATCTGATGATAGTTGTCCTCCAACTCCTGTTGATTATTATTGA	1377	0.4365	MDPWLDDLTDDLQSISFASTTTTAGADIKRSTSFGSTTTASTSAHLSTRSLNPPITKHHGPLSDPCWSAIHRIRSVSPSRHILPSDLRFSRRLGSGDISSVYLAELNDDGQIPAMFAAKVMDKKELVSRSKEGRAKTEREILESLDHPFLPTLYATIDASKWLCLLTEFCPGGDLHVLRQRQQNKRFSESAVRFYASEVLMALEYLHMLGIVYRDLKPENVLVRSDGHIMLTDFDLSLKCDADSTPAQIIISSQNSPQVIPQKNPHTGSSQIASSSCILPNCIVPAVSCFQPKRKRKKKQNQLNGPEFVAEPIDVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGIFIFELFYGVTPFRGLDNELTLANIVARALEFPKEPTVPATAKDLISQLLVKDPARRLGSIMGASTIKHHSFFQGVNWALLRCTTPPYVPPPYTKDDLSDDSCPPTPVDYY	458

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre11g03751	458	FunFam	serine/threonine-protein kinase D6PK-like	174	241	-	-
	Trre11g03751	458	PANTHER	FLIPPASE KINASE 1-RELATED	31	441	-	-
	Trre11g03751	458	Gene3D	Phosphorylase Kinase; domain 1	86	173	-	-
	Trre11g03751	458	Pfam	Protein kinase domain	90	299	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre11g03751	458	Pfam	Protein kinase domain	317	420	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre11g03751	458	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	211	223	IPR008271	GO:0004672\|GO:0006468
	Trre11g03751	458	ProSiteProfiles	Protein kinase domain profile.	87	420	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre11g03751	458	FunFam	serine/threonine-protein kinase D6PKL2	86	173	-	-
	Trre11g03751	458	Gene3D	Transferase(Phosphotransferase) domain 1	316	438	-	-
	Trre11g03751	458	Gene3D	Transferase(Phosphotransferase) domain 1	174	283	-	-
	Trre11g03751	458	SMART	serkin_6	87	420	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre11g03751	458	FunFam	serine/threonine-protein kinase D6PK-like	315	438	-	-
	Trre11g03751	458	MobiDBLite	consensus disorder prediction	31	54	-	-
	Trre11g03751	458	CDD	STKc_phototropin_like	85	430	-	-
	Trre11g03751	458	MobiDBLite	consensus disorder prediction	31	59	-	-
	Trre11g03751	458	SUPERFAMILY	Protein kinase-like (PK-like)	67	447	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre11g03751	Trre-Chr11	50796315	50807148	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre11g03751	1	458	AGC Kinase Gene Family	AT3G44610	65.032	0.0	577

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Trre11g03751		Pkinase	5.8e-38	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre11g03751	K08286		-	gmx:100792738	710.679