Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03745 ATGAACTTGGAGAATGAATCTACTACTAATTCTCATGCAAAGACAAAAGCAAAACCAAACACTCAAAAGAAAAAAACAGGAAGAAAGAAATTCAAGGAAACAAGGCACCCAATTTATAGAGGAATTCGTCAAAGAAATGAAAACAAATGGGTGTGTGAAATTCGTGAGCCAAACAAGAAAAAATCAAGAATATGGTGGCTTGGAACTTACCCTACACCTGAAATGGCAGCTATAGCACATGATATAGCTGTCCTAGCAATTAAGGGCACTTCAGCAATATTCAATTTTCCTAATTCTATTTCTCTTCTTCCAATTTTGAAATCAACTTCAGCTGAAGATATAAGAGAAGCTGCAAAGACTTTTACAAACACTTCTTCTTTTAGAGATGAGACTAAGTCTTGTTTGGTGGAATTCCCTCGCTGCTCTAACTCCACTGCTCAAAGCCTCAAACTCTCTCCGCCGGTCACGATTCTCATCGCCTCCGGTCACGATTCTCATCGCCTCCGGTCACGATTCTCATCGCTTCCGGTCACAATTCAGAGAAAGCCAAGTGAGAGAACTTGGAGAAGCTTGCTCATAAGTCCTCTTGCCATGTCAGGTTTGGTAATAAAAACACTTAAAATAAATGGACATAAAGAAGAACCATTGGATGAATCAATCAAACAGTCACATGCGACAATTGCAAATGACAATCTTGAAGAAAGTCTTGTTGATTTAGTTGGAGAAGTTGAGGAAGGATATGCTCCTTTCTTGGATGAGCTTAGCTTTGAATGGGATAAAGATATTGAAATTGAAGTAGAAGAGAGTGTTGAAGATGAAGATGATGAAGAAAAAAATGATGAAGATGTTGAAATAGATTCTGACTAG 867 0.3818 MNLENESTTNSHAKTKAKPNTQKKKTGRKKFKETRHPIYRGIRQRNENKWVCEIREPNKKKSRIWWLGTYPTPEMAAIAHDIAVLAIKGTSAIFNFPNSISLLPILKSTSAEDIREAAKTFTNTSSFRDETKSCLVEFPRCSNSTAQSLKLSPPVTILIASGHDSHRLRSRFSSLPVTIQRKPSERTWRSLLISPLAMSGLVIKTLKINGHKEEPLDESIKQSHATIANDNLEESLVDLVGEVEEGYAPFLDELSFEWDKDIEIEVEESVEDEDDEEKNDEDVEIDSD 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03745 288 CDD AP2 37 99 IPR001471 GO:0003700|GO:0006355
Trre11g03745 288 MobiDBLite consensus disorder prediction 1 33 - -
Trre11g03745 288 MobiDBLite consensus disorder prediction 17 33 - -
Trre11g03745 288 SUPERFAMILY DNA-binding domain 38 99 IPR016177 GO:0003677
Trre11g03745 288 ProSiteProfiles AP2/ERF domain profile. 38 97 IPR001471 GO:0003700|GO:0006355
Trre11g03745 288 MobiDBLite consensus disorder prediction 1 16 - -
Trre11g03745 288 SMART rav1_2 38 103 IPR001471 GO:0003700|GO:0006355
Trre11g03745 288 Pfam AP2 domain 37 89 IPR001471 GO:0003700|GO:0006355
Trre11g03745 288 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700|GO:0006355
Trre11g03745 288 PRINTS Ethylene responsive element binding protein signature 79 99 IPR001471 GO:0003700|GO:0006355
Trre11g03745 288 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 11 155 IPR045277 GO:0003700
Trre11g03745 288 Gene3D AP2/ERF domain 38 99 IPR036955 GO:0003700|GO:0006355
Trre11g03745 288 MobiDBLite consensus disorder prediction 266 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03745 Trre-Chr11 50733622 50741604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03745 10 131 AP2-EREBP Transcription Factor Family AT5G51990 54.918 3.56e-37 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre11g03745 AP2 1.8e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03745 - - gmx:100803317 163.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03745 11 50733622 50741604 Trre11g03745 11 50733622 50741604 ECH