Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre11g03737 | ATGAGATTGGAGAAATGTTGGTTTTGTTCTTCAACTGTATATCCTGGACATGGAATTCAGTTTGTTCGTAATGATGCAAAGATTTTTCGGTTTTGTAGATCAAAATGCCACAAGAACTTCAAAATGAAGAGAAATCCTCGGAAAGTAAAATGGACCAAGGCATATAGGCGTGTGCATGGAAAGGATATGACACAGGATTCAACCTTTGAGTTTGAGAGAAAGCGAAACAGGCCTGAGAGATACGACAGGAATCTTGCTGAGAATGTACTCAAGGCAATTCCTAAGATTGATAAGATCAGAGTCGGTAGGGAGGAGAGACACCATAAGGACAGGATGAAAGGCAACAAGGCGAAAGCGCTGAAGGAAGCAAAGAAGGAGGTGGATAACGACATCAATTTGATCAGAGCTCCTAACGCGCCACAAGATAAGATCAAAGTCATGGTTACCCAACAACAACCACAAGAGAATCCTCTCATGGAAGAGTGA | 486 | 0.4198 | MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNLAENVLKAIPKIDKIRVGREERHHKDRMKGNKAKALKEAKKEVDNDINLIRAPNAPQDKIKVMVTQQQPQENPLMEE | 161 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre11g03737 | 161 | MobiDBLite | consensus disorder prediction | 102 | 131 | - | - | |
| Trre11g03737 | 161 | CDD | Ribosomal_L24e_L24 | 1 | 54 | IPR000988 | - | |
| Trre11g03737 | 161 | SMART | 4TRASH | 6 | 44 | IPR011017 | - | |
| Trre11g03737 | 161 | Pfam | Ribosomal protein L24e | 1 | 65 | IPR000988 | - | |
| Trre11g03737 | 161 | FunFam | probable ribosome biogenesis protein RLP24 | 1 | 67 | - | - | |
| Trre11g03737 | 161 | MobiDBLite | consensus disorder prediction | 102 | 161 | - | - | |
| Trre11g03737 | 161 | Gene3D | Ribosomal protein L24e | 1 | 68 | IPR038630 | - | |
| Trre11g03737 | 161 | MobiDBLite | consensus disorder prediction | 144 | 161 | - | - | |
| Trre11g03737 | 161 | PANTHER | 60S RIBOSOMAL PROTEIN L24 | 1 | 143 | IPR000988 | - | |
| Trre11g03737 | 161 | ProSitePatterns | Ribosomal protein L24e signature. | 8 | 25 | IPR023442 | - | |
| Trre11g03737 | 161 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 4 | 56 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre11g03737 | Trre-Chr11 | 50689498 | 50690960 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre11g03737 | 1 | 161 | Cytoplasmic Ribosomal Protein Gene Family | AT2G44860 | 69.565 | 2.19e-81 | 236 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre11g03737 | K02896 | - | gmx:100306000 | 275.789 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Trre11g03737 | 11 | 50689498 | 50690960 | Trre11g03737 | 11 | 50689498 | 50690960 | ECH |