Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03723 ATGAGAGAGAGTGAAGAGAGAGAAGTGGAGAGGGGGGAGTGTGCTAGGGCAAACTCAACAAAAAAGAAAGGATTCTTCTATCATCTGGACAACATCACAACATTGTACTTCATCAATAACTTCCATGATGAAGTTACTACGGGTGAGCTTTGGAAACTCTTCCAAAAGTTTGGTAAGGTGGGTGAGGTTTATATACCTAAGAAGCTAGATAAGAAAGGAAGAAGGTTTGGTTTTGTCAAGTTTAAGGAGGTGCATGAGGTGGAGAAACTTAGTGAAAGCTTGAGTGATGTGTGGATTGGCTCATTCAAATTATGGATCAATCGTTCTCGCTTCCAACGCGCAGACAACAATGGTGGTAATTCCCAGAAACAACCTGAATCTCGCCCGACAATGTCTTTGTAG 402 0.4204 MRESEEREVERGECARANSTKKKGFFYHLDNITTLYFINNFHDEVTTGELWKLFQKFGKVGEVYIPKKLDKKGRRFGFVKFKEVHEVEKLSESLSDVWIGSFKLWINRSRFQRADNNGGNSQKQPESRPTMSL 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03723 133 MobiDBLite consensus disorder prediction 114 133 - -
Trre11g03723 133 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 102 IPR000504 GO:0003723
Trre11g03723 133 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 33 122 - -
Trre11g03723 133 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 111 IPR000504 GO:0003723
Trre11g03723 133 Gene3D - 33 118 IPR012677 -
Trre11g03723 133 SMART rrm1_1 34 107 IPR000504 GO:0003723
Trre11g03723 133 CDD RRM_SF 37 104 - -
Trre11g03723 133 SUPERFAMILY RNA-binding domain, RBD 37 121 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03723 Trre-Chr11 50509777 50510178 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03723 33 109 Eukaryotic Initiation Factors Gene Family AT3G16380 31.169 4.44e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03723 - K12891 ccaj:114915268 80.8777