Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03719 ATGGAGTTTTGGGGTGCTGAAGTTAAGGTTGGAGAAACCCTTAAGGTTGACCCAAATGAATTTGAGGCATGCATTCATCTATCACAGGCTGCATTAGGTGAATCAAAGAAAGACAAAGGAAATGATTCTGTGGTTCTTTTTGTGAAAGTTGGTGAACAGAAGCTAGTTTTGGGAACCCTTCTTAAGGACAAAATCCCTCAGATTTCTCTTGAATTGGTTTTGGACAAGGAGTTTGAGCTTTCTCATAATTCCAAAACTGCTAGTGTCCATTTCTATAGTGATGAGGAGGAGATCCCATTGGCTGTTGCAGAGAATGGTAAAACAGAAACAAAAGCAGAGGAATTGAAGGTTGCTGAACCTAAAAAAGCTAAGAACGCTACACCTGCCAAACCCGCACCTGCCAAACCTGCTAAACAAGTAAAGGTTGTTGATCCAAAGGAAGATTCTGATGATGAATCTGATGAAGATGATGATGAGATCGGAAGCTCTGACGATGAGATGGAGGATGTTGACAGTGATGAAGAAGACGAGGATGACAGTGATGAAGATGAGGAAGAGACTCCTGTGAAGAAGGTGGAGCAAGGAAAGAAGAGGGCCAATGAATCTGCTTCTAAAACCCCTGTTTCTTCCAAGAAGGCAAAAAATGCCACTCCTGAAAAGACTGATGGTAAGAAAGCTGGACATACAGCAACTCCTCACCCTAAGAAAGGAGGAAAGACTCCCAACACAGATGCCAAAAGTCCCAAGTCTGGAGGACAACTATCCTGCGGTAGTTGCAGCAAGACATTCAACTCTGAAACAGGACTTCAACAACACAGCAAAGCCAAGCATGGTGCTCAGTAA 843 0.4318 MEFWGAEVKVGETLKVDPNEFEACIHLSQAALGESKKDKGNDSVVLFVKVGEQKLVLGTLLKDKIPQISLELVLDKEFELSHNSKTASVHFYSDEEEIPLAVAENGKTETKAEELKVAEPKKAKNATPAKPAPAKPAKQVKVVDPKEDSDDESDEDDDEIGSSDDEMEDVDSDEEDEDDSDEDEEETPVKKVEQGKKRANESASKTPVSSKKAKNATPEKTDGKKAGHTATPHPKKGGKTPNTDAKSPKSGGQLSCGSCSKTFNSETGLQQHSKAKHGAQ 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03719 280 ProSitePatterns Zinc finger C2H2 type domain signature. 256 277 IPR013087 -
Trre11g03719 280 Pfam Nucleoplasmin-like domain 3 90 IPR041232 -
Trre11g03719 280 MobiDBLite consensus disorder prediction 109 123 - -
Trre11g03719 280 ProSiteProfiles Zinc finger C2H2 type domain profile. 254 280 IPR013087 -
Trre11g03719 280 MobiDBLite consensus disorder prediction 148 186 - -
Trre11g03719 280 Gene3D Nucleoplasmin core domain 1 97 - -
Trre11g03719 280 MobiDBLite consensus disorder prediction 243 274 - -
Trre11g03719 280 FunFam Histone deacetylase HDT1 1 98 - -
Trre11g03719 280 MobiDBLite consensus disorder prediction 215 229 - -
Trre11g03719 280 MobiDBLite consensus disorder prediction 109 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03719 Trre-Chr11 50464601 50467336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03719 1 279 C2H2 Transcription Factor Family AT5G03740 38.658 1.42e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre11g03719 NPL 3.6e-11 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03719 - - gmx:100795506 322.013