Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03699 ATGAAGCTTCTTCAGAAATCCAAATCGACGGAACCACAATCTGTATCGAAACGGAGAGGTAGACCAAGAAAACAGAGAAGAAAACTGACTGAAACTGTAACTGATGAATCCAATAGGATTGCATTGATTGGTCGATTCGTTTCGAAAGAGTTTTCGAAGAGTGTTTCTCGAATAGGAAAAGTAATTAATTATAGAACTGGATTCTATAGAGTTGAATATGAAGAAGGAATTTGTGAGAGTTTAGTTAGTGGTGACATTAGGAAAATTCTTATGGATGATTGTAATTTAGACGATGATTTGATTCGACGAAAAAATGAATTGGATGAAGCGTTATCGAGAAAGATCGTCGATGAATCGGATAAAAAATCGAGCGAATTGAATGTGGAAGAGGAAGAGAAGAATTCGAGCGAATTGAATGTGGAAAAGGACGAGGAAATGCGAGATTTAACCGATGCTGATTTGATTTCGGATGTTGAGACAGCGGTTGAATTGTTGCCGCAGCAGTTAGAATTGCCACCGGAGTTGATGCTACCACATTCTTCAGGAACTATTGGTGTTCCTGATAGTTGTGTCCATAATTTGTTTTCAGTTTATTCATTTCTGCGATCGTTTAGTGCTCGGTTATTTGTGAGTCCGTTTACTTTGGACGAATTCGTTGGCGCGCTTAACTGTGGAGTTCCGAATACACTGATTGATGCTGTACATAATGCTTTGATGCGTGCTTTGAGACGTCATCTGGAAAAAATTTCAACTGAGGACTCAAAGATAGCCTCAAGATGTTCAACTGAGGGCTCAAAGATAGCCTCAAGATGTCTTAGGTACAGTGAATGGAGCTTGCTTGATACATTGACTTGGCCTGTTTTCTTAATTCAATATTTAGCAGTTAATGGATGCACTAAGGGTTCTGAGTGGAAAGGATTTTATGACGAGATTTTTCATGGCGAGTATTATTCATTGCCTGCAAGTAGGAAGTTACAAATATTACAAATTCTCTGCGATGATGTTTTGGAGTTCGAGGAGCTAAGAACTGAAATGCACATGCGTGGAGAATCAGAGGCCGGGAAGAATTATGATGCTGAGGATATTCCTCATGCAGAAAAGGAACCGAAAAGAGTCCTCCATCGACGAAATGCAAAAACTGCTGATTGCCAGGATAAAGAATCTATGAAGTTTGTTTCAAAATTAGATGCTGTGAACTTACCTGGTAATTCTGAGGATGAGGTTGACAAAAATGGAGATGAATGTCGCCTCTGTGGCATGGATGGGACCTTGCTTTGTTGTGATGGATGTCCTGCTGTTTATCATTCAAGGTGTATCGGTGTGATGAAGATGTATATATCAGATGGGGAATGGCATTGTCCAGAATGCAAAATAAATACAATTGGACCAACAGTTGCACGGGGAACATCTCTTAGGGGGGCTGAAATGTTTGGAAATGATTTGTATGGGCAATTTTTCATCGGTACTTGCGACCACTTACTTGTGCTCAGTGGCAACAACAGGGAAGTTTATTGTAAATACTACAATCAGAATGACATTCCTGAAGTTATCCGAGTGCTTTGTGCTTCCATTCAACATAGACCTGTATACTCTGGTATTTGCATGGCGATGTTACAATATTGGAATATTTCAGAAAGCTTCCAACACCTTTGTATTCCAAATGGAACACATCTAAACTCAGAAAATTTAAAGATAGATGAAAATATCTCTGCTGCATTACTTCCTCATGTGGTTGAAAATGACCATAAAGGTGTTAGTTTGGGGAAAGCAGAATATGGTCCAACATCTGTGAATGGGGTCTGTAGTGATAATATGGCCCCATCTCTTGATGCATCATCATTGGTTACCAGTAGTCCCACTCATGAAACCAATGGCAAAGCTAACAAGTCATCTGCAGCGATTCCTGCCAAGTCCACCTTGGTAAGCTATCCATTTATTAATTGCGGGCAAACTAAGGGTGACTTCTCTGGTTCTGGAAAGTCTAATGATTTTGTGTATAGGGGTTGTTCCTATAAACCACAAGCATATGTTAATAACTATATGCATGGTGATTTTGCGGCATCTGCTGCTGCTAATATTGCCGTTCTTTATTCAGAGGATTCTAGACCAGTGAAAGCTCCACCTGAATACATTAACCTGGTTGCAAAAGCATTTTCACTAACAGCTTCACGCTTCTTTTGGCCAAGTTCTGACAAGAAGCCTGCGGAGGTTATAAGAGAGAGGTGTGGCTGGTGCCTTTCTTGTAAAGGCTCTGTTCCAGGCAAGAAAGTATGTATGTTAAATCATGCTGCTATATGTGCTACCAAAAGCGCCATGAAAATCCTTTCTGGTCTTGCTCCTGTAAGGAGTGGAGAAGGAATTAGCCCCACAATTGCAACCTATGTCATATATATGGAGGAAAGCTTATGTGGTTTAATAGATGGGCCCTTTCTTAGCAGAAACTATAGAAAGCAATGGCGTGAACAAGTGGAAAGGGCCACATCATTTAGTAACATAAAGCCCCTTTTACTTAATCTTGAGGAGAACATCCGCCCAATTGCTTTTTGTGGCGACTGGGTGAAGCTTGTGGATGAGTGGTTGGTTGAATCTCCTACAATCCAAAGTGCATCATCTACTCTTGGAACAACACAGGAACGTGCACCATGCGACCGATGTAGAAAATTACCTATCAAATATCCATTTGACACTTCTTCTGAAAACTTTGGCTGGTGGAATGGCAAATTTACCAAATCTGTATTTCAGAAAGCTGCATTGCCAAAATTTATGGTCAGAAAAGCAGCTCGGCAAGGTGGTTTGAGGAAAATTTTGGGTATTGTCTATCCTGAAGTCTCTGTAATTCCTAAAAGAAGTCGTCAGCTGTTTTGGAGAGCTGCCGTTGAGATGAGTAGGAATGCATCACAGCTCGCACTTCAGGTCCGATATCTAGATTTTCATATCAGATGGATTGATCTGATTCGGCCGGAGTATAACCTCCAGGATGGAAAAGGTCAAGATACTGAAGTTTCTGCTTTTAGAAATGCAATAATTTGTGACAAAAAGTTTGCTCAGGGAAAAACATCCTATGGCATAGATTTTGGGAGCCAAAAGCATATTTCCTCTCGAACAATGAAGAATGCTGAAACAATAGACGAAGGGTCAGATGGAAAGAAGTACTGGTTTTCTGAAACATGCATTCCTTTATATTTGGTAAAAGAGTATGAAGTAAGAAACAAAAAAGAGCCATCTCATAAAGATAACTTGAATGTTGCATCTCGATGGCACAAATGGCGGTTGAGTGCTATCTGCAAGGACATATTTTTTTACCTCACTTGCAAGAGAGACAAAACAGACATGTTACCATGTTCTGTATGTAAACAAGGTGTTTTATTTAGGAATGCTCTCAAGTGTAGTGCATGTCAAGGTTATTGCCACGAGGGCTGTTCAATAAATTCAACATTCTCTACATATAAAGATGTTGAGTTCTTGATCACATGCAAACAATGTTATCACACCAGATTACTTTCTCAGAAAGAGACCAGTAACAAATCTTCAACCACTCCCTTACTGTTAAAAGAAAGAGAACATGGCTCTTCGACAATTTTGAAGAAACCAGAGCCTAAATATGATGATCAAATACCGAGATCTACCAGGGTAAAGGATTGTTGTCCTGACATGAAAAAAGTTGCTTCCCAGACCCCTCTGGAAACCAAAAGCAGTAGCAGAAAATCCTCTTGGGGTATTATATGGAAAAAGAATAATAGTGAAGATACAGGCATTGATTTCAGGCTAAAAAAGATAATTATGAAGCGATCTCGTTCAAGCTTGCCTCAATTGGAACCTGATTGTCACTTATGCCATAAGCCATATAACCCTGATCTAATGTATATAGGCTGTGAAACATGTACCCGGTGGTATCATGCTGAAGCTCTTGAACTTGAAGAGTCCAAAATATTTTCTATGCTGGGATTTAAATGTTGCAGGTGTCGCAAGATAAAGTCACCTGTATGTCCTTACTCTGATTCGGTGTGCAAGGAGCAAGTTGGAGAGAAGTCACACTCACGGGCTTCTAAGAGAAAAAATTCTGGAGCAGATTCTTCTGGTCCTGGAACACTTTCTGAAAGAAGAGCAAAGGAGCCGGCTACTCCTATCTTTCCTGCAGAAGATGTTTCTATACATGAGAACAGTCATATGCCGTTTTCTCTGTCAAATGTTGAACTGATTACAGAACCCATGCCAGAGTTAGATGCAGGCATTGAGTGTAACGCCGTCTCTGGGTCAGAGCTTCAGAAAATACCCGAGGAGGAAAGTAATGGCACTTTTGGAGGTGAAGTTCGGCATGCTGAAATTGCAACACAGGATGAAATGGATAATTTGCCTGCAGAGGTTTTACCACCTTTTGTAGAACTTGACTCTATGTTCTCTGACTGCGATCTTCTCAATGACTCTGAAACTTTAGTTAATGAATACATGGAGTTTGAATCCCAAACTGATTTCTCCATGTCTGAACTTCTGCACCTAGATGATAACAGTCAATTTGAGGAAGCTGGTATGTCCAGGGACTTGACAGGATTTGCAAAAGATTCTTGTACACTAGGTGTTCCCGAAGAATGCACAACTACTAGTTTACAGAACAACCAGGAACCTACAATTTCATCACATCGAAATGTTCATAATTGTTCGCAATGTTCACAAACGGAACCAGCCCCTGATGTCTCTTGTCAGATTTGTAAGATGTGGATTCACAGCAAGTGTTCACCCTGGATTGAATCACCATCTAGGCTTGGAGATTGGAGGTGTGGTAATTGCAGGGAATGGCAATAA 4800 0.4035 MKLLQKSKSTEPQSVSKRRGRPRKQRRKLTETVTDESNRIALIGRFVSKEFSKSVSRIGKVINYRTGFYRVEYEEGICESLVSGDIRKILMDDCNLDDDLIRRKNELDEALSRKIVDESDKKSSELNVEEEEKNSSELNVEKDEEMRDLTDADLISDVETAVELLPQQLELPPELMLPHSSGTIGVPDSCVHNLFSVYSFLRSFSARLFVSPFTLDEFVGALNCGVPNTLIDAVHNALMRALRRHLEKISTEDSKIASRCSTEGSKIASRCLRYSEWSLLDTLTWPVFLIQYLAVNGCTKGSEWKGFYDEIFHGEYYSLPASRKLQILQILCDDVLEFEELRTEMHMRGESEAGKNYDAEDIPHAEKEPKRVLHRRNAKTADCQDKESMKFVSKLDAVNLPGNSEDEVDKNGDECRLCGMDGTLLCCDGCPAVYHSRCIGVMKMYISDGEWHCPECKINTIGPTVARGTSLRGAEMFGNDLYGQFFIGTCDHLLVLSGNNREVYCKYYNQNDIPEVIRVLCASIQHRPVYSGICMAMLQYWNISESFQHLCIPNGTHLNSENLKIDENISAALLPHVVENDHKGVSLGKAEYGPTSVNGVCSDNMAPSLDASSLVTSSPTHETNGKANKSSAAIPAKSTLVSYPFINCGQTKGDFSGSGKSNDFVYRGCSYKPQAYVNNYMHGDFAASAAANIAVLYSEDSRPVKAPPEYINLVAKAFSLTASRFFWPSSDKKPAEVIRERCGWCLSCKGSVPGKKVCMLNHAAICATKSAMKILSGLAPVRSGEGISPTIATYVIYMEESLCGLIDGPFLSRNYRKQWREQVERATSFSNIKPLLLNLEENIRPIAFCGDWVKLVDEWLVESPTIQSASSTLGTTQERAPCDRCRKLPIKYPFDTSSENFGWWNGKFTKSVFQKAALPKFMVRKAARQGGLRKILGIVYPEVSVIPKRSRQLFWRAAVEMSRNASQLALQVRYLDFHIRWIDLIRPEYNLQDGKGQDTEVSAFRNAIICDKKFAQGKTSYGIDFGSQKHISSRTMKNAETIDEGSDGKKYWFSETCIPLYLVKEYEVRNKKEPSHKDNLNVASRWHKWRLSAICKDIFFYLTCKRDKTDMLPCSVCKQGVLFRNALKCSACQGYCHEGCSINSTFSTYKDVEFLITCKQCYHTRLLSQKETSNKSSTTPLLLKEREHGSSTILKKPEPKYDDQIPRSTRVKDCCPDMKKVASQTPLETKSSSRKSSWGIIWKKNNSEDTGIDFRLKKIIMKRSRSSLPQLEPDCHLCHKPYNPDLMYIGCETCTRWYHAEALELEESKIFSMLGFKCCRCRKIKSPVCPYSDSVCKEQVGEKSHSRASKRKNSGADSSGPGTLSERRAKEPATPIFPAEDVSIHENSHMPFSLSNVELITEPMPELDAGIECNAVSGSELQKIPEEESNGTFGGEVRHAEIATQDEMDNLPAEVLPPFVELDSMFSDCDLLNDSETLVNEYMEFESQTDFSMSELLHLDDNSQFEEAGMSRDLTGFAKDSCTLGVPEECTTTSLQNNQEPTISSHRNVHNCSQCSQTEPAPDVSCQICKMWIHSKCSPWIESPSRLGDWRCGNCREWQ 1599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03699 1599 MobiDBLite consensus disorder prediction 1342 1374 - -
Trre11g03699 1599 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 303 345 IPR028942 -
Trre11g03699 1599 SUPERFAMILY FYVE/PHD zinc finger 400 459 IPR011011 -
Trre11g03699 1599 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1270 1328 IPR013083 -
Trre11g03699 1599 ProSiteProfiles DDT domain profile. 188 248 IPR018501 -
Trre11g03699 1599 ProSiteProfiles Zinc finger PHD-type profile. 412 459 IPR019787 -
Trre11g03699 1599 PANTHER PHD FINGER FAMILY PROTEIN 39 1563 - -
Trre11g03699 1599 MobiDBLite consensus disorder prediction 121 140 - -
Trre11g03699 1599 SUPERFAMILY FYVE/PHD zinc finger 1272 1328 IPR011011 -
Trre11g03699 1599 SMART PHD_3 1551 1596 IPR001965 -
Trre11g03699 1599 SMART PHD_3 1113 1162 IPR001965 -
Trre11g03699 1599 SMART PHD_3 414 457 IPR001965 -
Trre11g03699 1599 SMART PHD_3 1274 1322 IPR001965 -
Trre11g03699 1599 SUPERFAMILY FYVE/PHD zinc finger 1546 1596 IPR011011 -
Trre11g03699 1599 CDD PHD_SF 1552 1595 - -
Trre11g03699 1599 MobiDBLite consensus disorder prediction 1 31 - -
Trre11g03699 1599 SMART testlast3 188 248 IPR018501 -
Trre11g03699 1599 ProSitePatterns Zinc finger PHD-type signature. 415 456 IPR019786 -
Trre11g03699 1599 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 402 480 IPR013083 -
Trre11g03699 1599 Pfam DDT domain 189 245 IPR018501 -
Trre11g03699 1599 Coils Coil 121 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03699 Trre-Chr11 50286145 50293052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03699 40 1599 PHD Transcription Factor Family AT5G35210 40.199 0.0 1039
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Trre11g03699 DDT 1.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03699 - - mtr:25487492 1930.22