Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03685 ATGGATATGATGCATGTGCCTTGGATGAAAAAACTGTTGGCAATCACCACATTTTTTACAACTTGTGAAGTCCATACAAATGATCCAAAAAATGAGCGTAACATGTTTTGCATCGATTGCATTAACAATCCATATTGCGGATCTTGTATAAAATCACACCATAAAGATCACAATGTAATCCAAATAAGGAGGTCATCATATGATGAAGTAGTTAAGACGACTGATATCTACAAGCTTGTGGACATCCTTGGAATTCAAACTTATGTGATCAATAGCTCTTCAGTTCATGCAAGTTTGCATATATAA 306 0.3464 MDMMHVPWMKKLLAITTFFTTCEVHTNDPKNERNMFCIDCINNPYCGSCIKSHHKDHNVIQIRRSSYDEVVKTTDIYKLVDILGIQTYVINSSSVHASLHI 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03685 101 Gene3D Classic Zinc Finger 17 81 - -
Trre11g03685 101 SUPERFAMILY B-box zinc-binding domain 20 66 - -
Trre11g03685 101 Pfam PLATZ transcription factor 63 95 IPR006734 -
Trre11g03685 101 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 4 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03685 Trre-Chr11 50110465 50111622 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Trre11g03685 PLATZ 4.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03685 - - cam:101499108 154.066