Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03674 ATGACATTTGTTCCGTGGTTGAAAAAGTTACTCGCGGTCACGACATATTTTGCTGCGTGTAGAGTCCACTCGGACAAATCAAAGAAAGAGGGGAATAAATTCTGGTGTTTGGATTGTTATGATACTCCACTATGTGAAACTTGCATAACAACTAATCATAAAGATCACCGAATCATTCAAATAAGGAGGTTATCTTATTATGAATCAATCAAGACGATTGATATTTATAAACATGTGGACATCCTAGGAATTCAAACATATATTATGAATAACTTTACAGTCGTGTTCATAAACAAGAGGCCTCTTGCCCAAACCAAGAGTGTTAAAGTTGGTTACAGTAGCATCTCATGTTGTAAGACATGCAAAAGACATCTTGTAGACTCTTCTTACTTTTGCTCTTTGGAATGTAAGGCTCTCATAGGTTATATTAAGTCTTCCATTGAGTTTATATTTATCTTTTTATTGAGAAATGATTAA 477 0.3417 MTFVPWLKKLLAVTTYFAACRVHSDKSKKEGNKFWCLDCYDTPLCETCITTNHKDHRIIQIRRLSYYESIKTIDIYKHVDILGIQTYIMNNFTVVFINKRPLAQTKSVKVGYSSISCCKTCKRHLVDSSYFCSLECKALIGYIKSSIEFIFIFLLRND 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03674 158 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 5 137 - -
Trre11g03674 158 SUPERFAMILY RING/U-box 30 62 - -
Trre11g03674 158 Gene3D Classic Zinc Finger 15 73 - -
Trre11g03674 158 Pfam PLATZ transcription factor 62 137 IPR006734 -
Trre11g03674 158 Pfam B-box zinc finger 20 61 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03674 Trre-Chr11 49976607 49977438 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Trre11g03674 PLATZ 1.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03674 - - cam:101499108 181.415