Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03669 ATGTGCATTATACCAATGACGTTATCTTGTCGTCTGAACAGGGAAGGATTTTCTTTTAGAAAGGACAATTTAGGTTATGGTCAAGCTGCAAGCAACCTATCTGATACCTCATCTGACAGTGATATTGATGTCGATACAATTGAACAAACTGGAGCCTCAAGTTCACAAGTAGTCGCCTCTGTACATTCTGAATCATCAAATCCTAATAATAAAGGAAGTGACAGACTTGGGATATCATGTGCTCATGAAGAAGAAACAAGAAATTGGGAGTCGTCTTCCAATATCAGTGTTGAAAGAAGAGATGGCACTGCACAAAATGTTGATTCAATGCCAATCGAAGATGCCGGTAACGACCTTACCCAACCAAGTTTGCAAATTGAAGTTACGGACCATAGCATTATGCAAGAACAAGAACCAAGGGAGGCACATATTGAGCATTCTCTGATGGGTGATTTAACTGGTGATGAAAGAAATCTATCAAATCACAACAATCGTGTAGGGGGCAATATTGTTGATAATGTAGATTCGGTTTCGGTTATATCTACTGCTCTGGAAAGGGAGCAAGAGGAAGAAACTATTATTGAAAGTGAAGGAAGTGAATGGCATCAAACTAACAGAGAGTGGAGAGATAGCCCCCAGGAAAGTGTCGACGATAATCAGCACAGTAGCACATCAAATGAATGGCCCCAGAATAGCTTGGGAAATGACGATGCAGATAATTCTCGTACTCAAGAGCAAGTAGCATCATCTGAAGCGTGGCAAGAAGATGGCAGCTTTCAAGAGGCTGTAGAAATTTGGCTGGGTGGACCTTCTGATAATGGAGCAGCTCCAGTTGGTAGAATTCATGGATTCTATTTTCCAGAAGATGACAATGTGTACAGTGTTGAACTCAGGGAACTGCTAAATAGGAGAAGTGTCTCAAACCTCCTACGAAGCAGTTTTCGTGAAAGTCTTGATCAGTTGATACAATCATATGTTGAAAGGCAAGGTCATGCTCACGTTGAGTGGGAGGAGCTGCAAGAAACAACCCCTTCGTCTCCCTCAACAGAACAAGACCAGGATCAGCATAGAAGGGATCAGATTGTTGGTACGGCGGAGGACATTGTCAATAGTTCACGGAACCTGCCTTTACCGCCACCAATTCCTCCCCCTTTGCCTTCATGGGATCGACACTCACGTCATGACAATTGGTCAAGGAATGGCATAAATAATCAGCGCCGCGGAAATTTGCATTCATTTGCAGGACACAACCACTTTCCTTTAGCTGATGAGTGGGATAGTATTAGTGACTTGAGAATTGACATGGTTAGGCTACAGCAAAGGATGAATAATATGCAAAGAATGCTAGAAGCCTGTATGGATATGCAGCTTGAGTTGCAACGCTCAATAAGACAAGAAGTCTCTGCAGCCCTTAATCGCTCAACTTGTTCATCAGGAGTACATGACCATGTTTTACCAGACAATAAAACTAATTGGGAATGTGTGAGGAAAGGACTATGCTGTATATGCTGTGAAGAGAGTATTGATTGTTTGTTGTACAGATGTGGGCACATGTGCACATGTTCAAAATGTGCAAATCAATTGCTAGATAGCAGAAGAAAGTGTCCAATGTGTAGAGCACCAGTGGTGGAAGTGGTTCGTGCATATTCTATATAA 1656 0.4221 MCIIPMTLSCRLNREGFSFRKDNLGYGQAASNLSDTSSDSDIDVDTIEQTGASSSQVVASVHSESSNPNNKGSDRLGISCAHEEETRNWESSSNISVERRDGTAQNVDSMPIEDAGNDLTQPSLQIEVTDHSIMQEQEPREAHIEHSLMGDLTGDERNLSNHNNRVGGNIVDNVDSVSVISTALEREQEEETIIESEGSEWHQTNREWRDSPQESVDDNQHSSTSNEWPQNSLGNDDADNSRTQEQVASSEAWQEDGSFQEAVEIWLGGPSDNGAAPVGRIHGFYFPEDDNVYSVELRELLNRRSVSNLLRSSFRESLDQLIQSYVERQGHAHVEWEELQETTPSSPSTEQDQDQHRRDQIVGTAEDIVNSSRNLPLPPPIPPPLPSWDRHSRHDNWSRNGINNQRRGNLHSFAGHNHFPLADEWDSISDLRIDMVRLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSTCSSGVHDHVLPDNKTNWECVRKGLCCICCEESIDCLLYRCGHMCTCSKCANQLLDSRRKCPMCRAPVVEVVRAYSI 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03669 551 MobiDBLite consensus disorder prediction 50 121 - -
Trre11g03669 551 MobiDBLite consensus disorder prediction 50 74 - -
Trre11g03669 551 Pfam Zinc finger, C3HC4 type (RING finger) 497 544 - -
Trre11g03669 551 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 485 550 IPR013083 -
Trre11g03669 551 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 14 551 - -
Trre11g03669 551 MobiDBLite consensus disorder prediction 217 256 - -
Trre11g03669 551 ProSiteProfiles Zinc finger RING-type profile. 500 539 IPR001841 -
Trre11g03669 551 Coils Coil 428 455 - -
Trre11g03669 551 MobiDBLite consensus disorder prediction 186 216 - -
Trre11g03669 551 CDD mRING-HC-C3HC5_NEU1 500 549 - -
Trre11g03669 551 MobiDBLite consensus disorder prediction 336 403 - -
Trre11g03669 551 MobiDBLite consensus disorder prediction 186 256 - -
Trre11g03669 551 SUPERFAMILY RING/U-box 486 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03669 Trre-Chr11 49948338 49950765 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03669 500 546 C3H Transcription Factor Family AT3G06140 42.553 4.27e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03669 - - var:108334224 658.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03669 11 49948338 49950765 Trre11g03669 11 49948338 49950765 ECH
Trre11g03669 11 49948338 49950765 Trre7g01518 7 11395828 11400199 PCT