Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03665 ATGACATTTGTTCCGTGGTTGAAAAAGTTACTCGCGGTCACGACATTTTTTGCTGCGTGTAGAGTCCACTCGGACAAATCAAAGAAAGAGGGGAATAAATTCTGGTGTTTGGATTGTTATGATACTCCACTATGTGAAACTTGCATAACAACTAATCATAAAGATCACCGAATCATTCAAATAAGGAGGTTATCTTATTATGAATCAATCAAGACGATTGATATTTATAAACATGTGGACATCCTAGGAATTCAAACATATATTATGAATAACTTTACAGTCGTGTTCATAAACAAGAGGCCTCTTGCCCAAACCAAGAGTGTTAAAACTCTTCTTACTTTTGCTCTTTGGAATGTAAGGTTGAACATATAG 372 0.3522 MTFVPWLKKLLAVTTFFAACRVHSDKSKKEGNKFWCLDCYDTPLCETCITTNHKDHRIIQIRRLSYYESIKTIDIYKHVDILGIQTYIMNNFTVVFINKRPLAQTKSVKTLLTFALWNVRLNI 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03665 123 Pfam PLATZ transcription factor 62 108 IPR006734 -
Trre11g03665 123 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 5 108 - -
Trre11g03665 123 SUPERFAMILY RING/U-box 30 62 - -
Trre11g03665 123 Gene3D Classic Zinc Finger 17 74 - -
Trre11g03665 123 Pfam B-box zinc finger 20 61 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03665 Trre-Chr11 49924844 49926190 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Trre11g03665 PLATZ 3.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03665 - - cam:101499108 149.443