LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre11g03661	ATGGCTGTTGCTGGAGTGCATGCAGCTGCGGTGGACTCTACATTTTTGAGGGACTCTCATTCTCGGTCACCAAGGAGCCAAGAAGATGGAGGGAGGAGAGGTACCCGGTCATCTTCGCTCTTGCAAATGTGGCGTGAGCTTGAAGATGAGCACGTGGTGAGACAGGTTCAAGGAAGATCTGATGATGTATTAGTTCAACAGAGGAGTGATGAGTTGGTTGTAGATGGATCGCAGGAAAATATGAATCATATGTCAGAAGATGCAGTTTTAGGTGAGAATGATTCTGAAACATGGTCACAGTCACAGTCACAGAGTCAGAATGGGTCTCAGTATGAACAGGATCAGGTGGATTTGAACAATTCTAGTCATGAAAACTCTTCTGGTATGGGAGATGTTGGGAGGGAAAGAGTAAGGAGAGTTTTCAAGGAATGGATGAGTAGTGGTGGTTCTAGGGTTCATGCATCAAATATTACTCGAGGAAATAGTGGTTCGAGGGGTGAATTGCGTGGAAAAACTGAGCAGGAAAGAGTGAATGTCGTAAGGCAATGGGTAGAGATGAGTAGCCAGCTGAGCGGTGTTTCTGTTGGGGAGAATAGGGAAGAACAGTCTGCTGAATTTAGTAACCAAACTGAATGTGTTCATGATGGATTGGTTGTCAATCAGAATGAAGGCCAAAGTGAGCATATATCACGAAGAAGATTCCGTAAATTACACGGTCGGCATTTTATGGTTGATATTGTTAAGAAGACTGTGATGGAAAGGGAAAGAGAGTATCATGAATTGTTGGAACGTCGGGCTGTATCTCATTTTCCCCATCGCAATCGCATTCAGGCCTTGCTTAGAGGCAGGTTTTTGAGAAATGATAGACCAATTGATAATAATCGGCCGACTTCCATTGCAGAAAGTGAATTAGGCTTATTGAGACAAAAACAGACTGTATCATGTCTAAGGGAAGGATTTTCTTTTAGAAAGGACAATTTAGGTTATGGTCAAGCTGCAAGCAACCTATCTGATACCTCATCTGACAGTGATATTGATGTCGATACAATTGAACAAACTGGAGCCTCAAGTTCACAAGTAGTCGCCTCTGTACATTCTGAATTATCAAATCCTAATAATAAAGGAAGTGACAGACTTGGGATATCATGTGCTCATGAAGAAGAAACAAGAAATTGGGAGTCGTCTTCCAATATCAGTGTTGAAAGAAGAGATGGCACTGCACAAAATGTTGATTCAATGCCAATCGAAGATGCCGGTAACGACCTTACCCAACCAAGTTTGCAAATTGAAGTTACGGACCATAGCATTATGCAAGAACAAGAACCAAGGGAGGCACATATTGAGCATTCTCTGATGGGTGATTTAACTGGTGATGAAAGAAATCTATCAAATCACAACAATCGTGTAGGGGGCAATATTGTTGATAATGTAGATTCGGTTTCGGTTATATCTACTGCTCTGGAAAGGGAGCAAGAGGAAGAAACTATTATTGAAAGTGAAGGAAGTGAATGGCATCAAACTAACAGAGAGTGGAGAGATAGCCCCCAGGAAAGTGTCGACGATAATCAGCACAGTAGCACATCAAATGAATGGCCCCAGAATAGCTTGGGAAATGACGATGCAGATAATTCTCGTACTCAAGAGCAAGTAGCATCATCTGAAGCGTGGCAAGAAGATGGCAGCTTTCAAGAGGCTGTAGAAATTTGGCTGGGTGGACCTTCTGATAATGGAGCAGCTCCAGTTGGTAGAATTCATGGATTCTATTTTCCAGAAGATGACAATGTGTACAGTGTTGAACTCAGGGAACTGCTAAATAGGAGAAGTGTCTCAAACCTCCTACGAAGCAGTTTTCGTGAAAGTCTTGATCAGTTGATACAATCATATGTTGAAAGGCAAGGTCATGCTCACGTTGAGTGGGAGGAGCTGCAAGAAACAACCCCTTCGTCTCCCTCAACAGAACAAGACCAGGATCAGCATAGAAGGGATCAGATTGTTGGTACGGCGGAGGACATTGTCAATAGTTCACGGAACCTGCCTTTACCGCCACCAATTCCTCCCCCTTTGCCTTCATGGGATCGACACTCACGTCATGACAATTGGTCAAGGAATGGCATAAATAATCAGCGCCGCGGAAATTTGCATTCATTTGCAGGACACAACCACTTTCCTTTAGCTGATGAGTGGGATAGTATTAGTGACTTGAGAATTGACATGGTTAGGCTACAGCAAAGGATGAATAATATGCAAAGAATGCTAGAAGCCTGTATGGATATGCAGCTTGAGTTGCAACGCTCAATAAGACAAGAAGTCTCTGCAGCCCTTAATCGCTCAACTTGTTCATCAGGAGTACATGACCATGTTTTACCAGACAATAAAACTAATTGGGAATGTGTGAGGAAAGGACTTTGCTGTATATGCTGTGAAGAGAGTATTGATTGTTTGTTGTACAGATGTGGGCACATGTGTACATGTTCAAAATGTGCAAATCAATTGCTAGATAGTAGAAGAAAGTGTCCAATGTGTAGAGCACCAGTGGTGGAAGTGGTTCGTGCATATTCTATATAA	2565	0.4269	MAVAGVHAAAVDSTFLRDSHSRSPRSQEDGGRRGTRSSSLLQMWRELEDEHVVRQVQGRSDDVLVQQRSDELVVDGSQENMNHMSEDAVLGENDSETWSQSQSQSQNGSQYEQDQVDLNNSSHENSSGMGDVGRERVRRVFKEWMSSGGSRVHASNITRGNSGSRGELRGKTEQERVNVVRQWVEMSSQLSGVSVGENREEQSAEFSNQTECVHDGLVVNQNEGQSEHISRRRFRKLHGRHFMVDIVKKTVMEREREYHELLERRAVSHFPHRNRIQALLRGRFLRNDRPIDNNRPTSIAESELGLLRQKQTVSCLREGFSFRKDNLGYGQAASNLSDTSSDSDIDVDTIEQTGASSSQVVASVHSELSNPNNKGSDRLGISCAHEEETRNWESSSNISVERRDGTAQNVDSMPIEDAGNDLTQPSLQIEVTDHSIMQEQEPREAHIEHSLMGDLTGDERNLSNHNNRVGGNIVDNVDSVSVISTALEREQEEETIIESEGSEWHQTNREWRDSPQESVDDNQHSSTSNEWPQNSLGNDDADNSRTQEQVASSEAWQEDGSFQEAVEIWLGGPSDNGAAPVGRIHGFYFPEDDNVYSVELRELLNRRSVSNLLRSSFRESLDQLIQSYVERQGHAHVEWEELQETTPSSPSTEQDQDQHRRDQIVGTAEDIVNSSRNLPLPPPIPPPLPSWDRHSRHDNWSRNGINNQRRGNLHSFAGHNHFPLADEWDSISDLRIDMVRLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSTCSSGVHDHVLPDNKTNWECVRKGLCCICCEESIDCLLYRCGHMCTCSKCANQLLDSRRKCPMCRAPVVEVVRAYSI	854

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre11g03661	854	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	788	853	IPR013083	-
	Trre11g03661	854	ProSiteProfiles	Zinc finger RING-type profile.	803	842	IPR001841	-
	Trre11g03661	854	Coils	Coil	731	758	-	-
	Trre11g03661	854	MobiDBLite	consensus disorder prediction	150	172	-	-
	Trre11g03661	854	MobiDBLite	consensus disorder prediction	489	519	-	-
	Trre11g03661	854	MobiDBLite	consensus disorder prediction	18	32	-	-
	Trre11g03661	854	MobiDBLite	consensus disorder prediction	15	37	-	-
	Trre11g03661	854	MobiDBLite	consensus disorder prediction	520	559	-	-
	Trre11g03661	854	MobiDBLite	consensus disorder prediction	90	131	-	-
	Trre11g03661	854	MobiDBLite	consensus disorder prediction	353	377	-	-
	Trre11g03661	854	MobiDBLite	consensus disorder prediction	353	424	-	-
	Trre11g03661	854	MobiDBLite	consensus disorder prediction	489	559	-	-
	Trre11g03661	854	MobiDBLite	consensus disorder prediction	150	165	-	-
	Trre11g03661	854	Pfam	Zinc finger, C3HC4 type (RING finger)	800	847	-	-
	Trre11g03661	854	SUPERFAMILY	RING/U-box	790	848	-	-
	Trre11g03661	854	MobiDBLite	consensus disorder prediction	92	128	-	-
	Trre11g03661	854	PANTHER	RING/U-BOX SUPERFAMILY PROTEIN	1	854	-	-
	Trre11g03661	854	MobiDBLite	consensus disorder prediction	639	706	-	-
	Trre11g03661	854	CDD	mRING-HC-C3HC5_NEU1	803	852	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre11g03661	Trre-Chr11	49903813	49909842	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre11g03661	803	849	C3H Transcription Factor Family	AT3G06140	42.553	6.13e-07	50.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre11g03661	-		-	gmx:100804887	1002.28