Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03661 ATGGCTGTTGCTGGAGTGCATGCAGCTGCGGTGGACTCTACATTTTTGAGGGACTCTCATTCTCGGTCACCAAGGAGCCAAGAAGATGGAGGGAGGAGAGGTACCCGGTCATCTTCGCTCTTGCAAATGTGGCGTGAGCTTGAAGATGAGCACGTGGTGAGACAGGTTCAAGGAAGATCTGATGATGTATTAGTTCAACAGAGGAGTGATGAGTTGGTTGTAGATGGATCGCAGGAAAATATGAATCATATGTCAGAAGATGCAGTTTTAGGTGAGAATGATTCTGAAACATGGTCACAGTCACAGTCACAGAGTCAGAATGGGTCTCAGTATGAACAGGATCAGGTGGATTTGAACAATTCTAGTCATGAAAACTCTTCTGGTATGGGAGATGTTGGGAGGGAAAGAGTAAGGAGAGTTTTCAAGGAATGGATGAGTAGTGGTGGTTCTAGGGTTCATGCATCAAATATTACTCGAGGAAATAGTGGTTCGAGGGGTGAATTGCGTGGAAAAACTGAGCAGGAAAGAGTGAATGTCGTAAGGCAATGGGTAGAGATGAGTAGCCAGCTGAGCGGTGTTTCTGTTGGGGAGAATAGGGAAGAACAGTCTGCTGAATTTAGTAACCAAACTGAATGTGTTCATGATGGATTGGTTGTCAATCAGAATGAAGGCCAAAGTGAGCATATATCACGAAGAAGATTCCGTAAATTACACGGTCGGCATTTTATGGTTGATATTGTTAAGAAGACTGTGATGGAAAGGGAAAGAGAGTATCATGAATTGTTGGAACGTCGGGCTGTATCTCATTTTCCCCATCGCAATCGCATTCAGGCCTTGCTTAGAGGCAGGTTTTTGAGAAATGATAGACCAATTGATAATAATCGGCCGACTTCCATTGCAGAAAGTGAATTAGGCTTATTGAGACAAAAACAGACTGTATCATGTCTAAGGGAAGGATTTTCTTTTAGAAAGGACAATTTAGGTTATGGTCAAGCTGCAAGCAACCTATCTGATACCTCATCTGACAGTGATATTGATGTCGATACAATTGAACAAACTGGAGCCTCAAGTTCACAAGTAGTCGCCTCTGTACATTCTGAATTATCAAATCCTAATAATAAAGGAAGTGACAGACTTGGGATATCATGTGCTCATGAAGAAGAAACAAGAAATTGGGAGTCGTCTTCCAATATCAGTGTTGAAAGAAGAGATGGCACTGCACAAAATGTTGATTCAATGCCAATCGAAGATGCCGGTAACGACCTTACCCAACCAAGTTTGCAAATTGAAGTTACGGACCATAGCATTATGCAAGAACAAGAACCAAGGGAGGCACATATTGAGCATTCTCTGATGGGTGATTTAACTGGTGATGAAAGAAATCTATCAAATCACAACAATCGTGTAGGGGGCAATATTGTTGATAATGTAGATTCGGTTTCGGTTATATCTACTGCTCTGGAAAGGGAGCAAGAGGAAGAAACTATTATTGAAAGTGAAGGAAGTGAATGGCATCAAACTAACAGAGAGTGGAGAGATAGCCCCCAGGAAAGTGTCGACGATAATCAGCACAGTAGCACATCAAATGAATGGCCCCAGAATAGCTTGGGAAATGACGATGCAGATAATTCTCGTACTCAAGAGCAAGTAGCATCATCTGAAGCGTGGCAAGAAGATGGCAGCTTTCAAGAGGCTGTAGAAATTTGGCTGGGTGGACCTTCTGATAATGGAGCAGCTCCAGTTGGTAGAATTCATGGATTCTATTTTCCAGAAGATGACAATGTGTACAGTGTTGAACTCAGGGAACTGCTAAATAGGAGAAGTGTCTCAAACCTCCTACGAAGCAGTTTTCGTGAAAGTCTTGATCAGTTGATACAATCATATGTTGAAAGGCAAGGTCATGCTCACGTTGAGTGGGAGGAGCTGCAAGAAACAACCCCTTCGTCTCCCTCAACAGAACAAGACCAGGATCAGCATAGAAGGGATCAGATTGTTGGTACGGCGGAGGACATTGTCAATAGTTCACGGAACCTGCCTTTACCGCCACCAATTCCTCCCCCTTTGCCTTCATGGGATCGACACTCACGTCATGACAATTGGTCAAGGAATGGCATAAATAATCAGCGCCGCGGAAATTTGCATTCATTTGCAGGACACAACCACTTTCCTTTAGCTGATGAGTGGGATAGTATTAGTGACTTGAGAATTGACATGGTTAGGCTACAGCAAAGGATGAATAATATGCAAAGAATGCTAGAAGCCTGTATGGATATGCAGCTTGAGTTGCAACGCTCAATAAGACAAGAAGTCTCTGCAGCCCTTAATCGCTCAACTTGTTCATCAGGAGTACATGACCATGTTTTACCAGACAATAAAACTAATTGGGAATGTGTGAGGAAAGGACTTTGCTGTATATGCTGTGAAGAGAGTATTGATTGTTTGTTGTACAGATGTGGGCACATGTGTACATGTTCAAAATGTGCAAATCAATTGCTAGATAGTAGAAGAAAGTGTCCAATGTGTAGAGCACCAGTGGTGGAAGTGGTTCGTGCATATTCTATATAA 2565 0.4269 MAVAGVHAAAVDSTFLRDSHSRSPRSQEDGGRRGTRSSSLLQMWRELEDEHVVRQVQGRSDDVLVQQRSDELVVDGSQENMNHMSEDAVLGENDSETWSQSQSQSQNGSQYEQDQVDLNNSSHENSSGMGDVGRERVRRVFKEWMSSGGSRVHASNITRGNSGSRGELRGKTEQERVNVVRQWVEMSSQLSGVSVGENREEQSAEFSNQTECVHDGLVVNQNEGQSEHISRRRFRKLHGRHFMVDIVKKTVMEREREYHELLERRAVSHFPHRNRIQALLRGRFLRNDRPIDNNRPTSIAESELGLLRQKQTVSCLREGFSFRKDNLGYGQAASNLSDTSSDSDIDVDTIEQTGASSSQVVASVHSELSNPNNKGSDRLGISCAHEEETRNWESSSNISVERRDGTAQNVDSMPIEDAGNDLTQPSLQIEVTDHSIMQEQEPREAHIEHSLMGDLTGDERNLSNHNNRVGGNIVDNVDSVSVISTALEREQEEETIIESEGSEWHQTNREWRDSPQESVDDNQHSSTSNEWPQNSLGNDDADNSRTQEQVASSEAWQEDGSFQEAVEIWLGGPSDNGAAPVGRIHGFYFPEDDNVYSVELRELLNRRSVSNLLRSSFRESLDQLIQSYVERQGHAHVEWEELQETTPSSPSTEQDQDQHRRDQIVGTAEDIVNSSRNLPLPPPIPPPLPSWDRHSRHDNWSRNGINNQRRGNLHSFAGHNHFPLADEWDSISDLRIDMVRLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSTCSSGVHDHVLPDNKTNWECVRKGLCCICCEESIDCLLYRCGHMCTCSKCANQLLDSRRKCPMCRAPVVEVVRAYSI 854
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03661 854 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 788 853 IPR013083 -
Trre11g03661 854 ProSiteProfiles Zinc finger RING-type profile. 803 842 IPR001841 -
Trre11g03661 854 Coils Coil 731 758 - -
Trre11g03661 854 MobiDBLite consensus disorder prediction 150 172 - -
Trre11g03661 854 MobiDBLite consensus disorder prediction 489 519 - -
Trre11g03661 854 MobiDBLite consensus disorder prediction 18 32 - -
Trre11g03661 854 MobiDBLite consensus disorder prediction 15 37 - -
Trre11g03661 854 MobiDBLite consensus disorder prediction 520 559 - -
Trre11g03661 854 MobiDBLite consensus disorder prediction 90 131 - -
Trre11g03661 854 MobiDBLite consensus disorder prediction 353 377 - -
Trre11g03661 854 MobiDBLite consensus disorder prediction 353 424 - -
Trre11g03661 854 MobiDBLite consensus disorder prediction 489 559 - -
Trre11g03661 854 MobiDBLite consensus disorder prediction 150 165 - -
Trre11g03661 854 Pfam Zinc finger, C3HC4 type (RING finger) 800 847 - -
Trre11g03661 854 SUPERFAMILY RING/U-box 790 848 - -
Trre11g03661 854 MobiDBLite consensus disorder prediction 92 128 - -
Trre11g03661 854 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 854 - -
Trre11g03661 854 MobiDBLite consensus disorder prediction 639 706 - -
Trre11g03661 854 CDD mRING-HC-C3HC5_NEU1 803 852 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre11g03661 Trre-Chr11 49903813 49909842 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03661 803 849 C3H Transcription Factor Family AT3G06140 42.553 6.13e-07 50.8
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03661 - - gmx:100804887 1002.28