Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre11g03661 | ATGGCTGTTGCTGGAGTGCATGCAGCTGCGGTGGACTCTACATTTTTGAGGGACTCTCATTCTCGGTCACCAAGGAGCCAAGAAGATGGAGGGAGGAGAGGTACCCGGTCATCTTCGCTCTTGCAAATGTGGCGTGAGCTTGAAGATGAGCACGTGGTGAGACAGGTTCAAGGAAGATCTGATGATGTATTAGTTCAACAGAGGAGTGATGAGTTGGTTGTAGATGGATCGCAGGAAAATATGAATCATATGTCAGAAGATGCAGTTTTAGGTGAGAATGATTCTGAAACATGGTCACAGTCACAGTCACAGAGTCAGAATGGGTCTCAGTATGAACAGGATCAGGTGGATTTGAACAATTCTAGTCATGAAAACTCTTCTGGTATGGGAGATGTTGGGAGGGAAAGAGTAAGGAGAGTTTTCAAGGAATGGATGAGTAGTGGTGGTTCTAGGGTTCATGCATCAAATATTACTCGAGGAAATAGTGGTTCGAGGGGTGAATTGCGTGGAAAAACTGAGCAGGAAAGAGTGAATGTCGTAAGGCAATGGGTAGAGATGAGTAGCCAGCTGAGCGGTGTTTCTGTTGGGGAGAATAGGGAAGAACAGTCTGCTGAATTTAGTAACCAAACTGAATGTGTTCATGATGGATTGGTTGTCAATCAGAATGAAGGCCAAAGTGAGCATATATCACGAAGAAGATTCCGTAAATTACACGGTCGGCATTTTATGGTTGATATTGTTAAGAAGACTGTGATGGAAAGGGAAAGAGAGTATCATGAATTGTTGGAACGTCGGGCTGTATCTCATTTTCCCCATCGCAATCGCATTCAGGCCTTGCTTAGAGGCAGGTTTTTGAGAAATGATAGACCAATTGATAATAATCGGCCGACTTCCATTGCAGAAAGTGAATTAGGCTTATTGAGACAAAAACAGACTGTATCATGTCTAAGGGAAGGATTTTCTTTTAGAAAGGACAATTTAGGTTATGGTCAAGCTGCAAGCAACCTATCTGATACCTCATCTGACAGTGATATTGATGTCGATACAATTGAACAAACTGGAGCCTCAAGTTCACAAGTAGTCGCCTCTGTACATTCTGAATTATCAAATCCTAATAATAAAGGAAGTGACAGACTTGGGATATCATGTGCTCATGAAGAAGAAACAAGAAATTGGGAGTCGTCTTCCAATATCAGTGTTGAAAGAAGAGATGGCACTGCACAAAATGTTGATTCAATGCCAATCGAAGATGCCGGTAACGACCTTACCCAACCAAGTTTGCAAATTGAAGTTACGGACCATAGCATTATGCAAGAACAAGAACCAAGGGAGGCACATATTGAGCATTCTCTGATGGGTGATTTAACTGGTGATGAAAGAAATCTATCAAATCACAACAATCGTGTAGGGGGCAATATTGTTGATAATGTAGATTCGGTTTCGGTTATATCTACTGCTCTGGAAAGGGAGCAAGAGGAAGAAACTATTATTGAAAGTGAAGGAAGTGAATGGCATCAAACTAACAGAGAGTGGAGAGATAGCCCCCAGGAAAGTGTCGACGATAATCAGCACAGTAGCACATCAAATGAATGGCCCCAGAATAGCTTGGGAAATGACGATGCAGATAATTCTCGTACTCAAGAGCAAGTAGCATCATCTGAAGCGTGGCAAGAAGATGGCAGCTTTCAAGAGGCTGTAGAAATTTGGCTGGGTGGACCTTCTGATAATGGAGCAGCTCCAGTTGGTAGAATTCATGGATTCTATTTTCCAGAAGATGACAATGTGTACAGTGTTGAACTCAGGGAACTGCTAAATAGGAGAAGTGTCTCAAACCTCCTACGAAGCAGTTTTCGTGAAAGTCTTGATCAGTTGATACAATCATATGTTGAAAGGCAAGGTCATGCTCACGTTGAGTGGGAGGAGCTGCAAGAAACAACCCCTTCGTCTCCCTCAACAGAACAAGACCAGGATCAGCATAGAAGGGATCAGATTGTTGGTACGGCGGAGGACATTGTCAATAGTTCACGGAACCTGCCTTTACCGCCACCAATTCCTCCCCCTTTGCCTTCATGGGATCGACACTCACGTCATGACAATTGGTCAAGGAATGGCATAAATAATCAGCGCCGCGGAAATTTGCATTCATTTGCAGGACACAACCACTTTCCTTTAGCTGATGAGTGGGATAGTATTAGTGACTTGAGAATTGACATGGTTAGGCTACAGCAAAGGATGAATAATATGCAAAGAATGCTAGAAGCCTGTATGGATATGCAGCTTGAGTTGCAACGCTCAATAAGACAAGAAGTCTCTGCAGCCCTTAATCGCTCAACTTGTTCATCAGGAGTACATGACCATGTTTTACCAGACAATAAAACTAATTGGGAATGTGTGAGGAAAGGACTTTGCTGTATATGCTGTGAAGAGAGTATTGATTGTTTGTTGTACAGATGTGGGCACATGTGTACATGTTCAAAATGTGCAAATCAATTGCTAGATAGTAGAAGAAAGTGTCCAATGTGTAGAGCACCAGTGGTGGAAGTGGTTCGTGCATATTCTATATAA | 2565 | 0.4269 | MAVAGVHAAAVDSTFLRDSHSRSPRSQEDGGRRGTRSSSLLQMWRELEDEHVVRQVQGRSDDVLVQQRSDELVVDGSQENMNHMSEDAVLGENDSETWSQSQSQSQNGSQYEQDQVDLNNSSHENSSGMGDVGRERVRRVFKEWMSSGGSRVHASNITRGNSGSRGELRGKTEQERVNVVRQWVEMSSQLSGVSVGENREEQSAEFSNQTECVHDGLVVNQNEGQSEHISRRRFRKLHGRHFMVDIVKKTVMEREREYHELLERRAVSHFPHRNRIQALLRGRFLRNDRPIDNNRPTSIAESELGLLRQKQTVSCLREGFSFRKDNLGYGQAASNLSDTSSDSDIDVDTIEQTGASSSQVVASVHSELSNPNNKGSDRLGISCAHEEETRNWESSSNISVERRDGTAQNVDSMPIEDAGNDLTQPSLQIEVTDHSIMQEQEPREAHIEHSLMGDLTGDERNLSNHNNRVGGNIVDNVDSVSVISTALEREQEEETIIESEGSEWHQTNREWRDSPQESVDDNQHSSTSNEWPQNSLGNDDADNSRTQEQVASSEAWQEDGSFQEAVEIWLGGPSDNGAAPVGRIHGFYFPEDDNVYSVELRELLNRRSVSNLLRSSFRESLDQLIQSYVERQGHAHVEWEELQETTPSSPSTEQDQDQHRRDQIVGTAEDIVNSSRNLPLPPPIPPPLPSWDRHSRHDNWSRNGINNQRRGNLHSFAGHNHFPLADEWDSISDLRIDMVRLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSTCSSGVHDHVLPDNKTNWECVRKGLCCICCEESIDCLLYRCGHMCTCSKCANQLLDSRRKCPMCRAPVVEVVRAYSI | 854 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre11g03661 | 854 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 788 | 853 | IPR013083 | - | |
Trre11g03661 | 854 | ProSiteProfiles | Zinc finger RING-type profile. | 803 | 842 | IPR001841 | - | |
Trre11g03661 | 854 | Coils | Coil | 731 | 758 | - | - | |
Trre11g03661 | 854 | MobiDBLite | consensus disorder prediction | 150 | 172 | - | - | |
Trre11g03661 | 854 | MobiDBLite | consensus disorder prediction | 489 | 519 | - | - | |
Trre11g03661 | 854 | MobiDBLite | consensus disorder prediction | 18 | 32 | - | - | |
Trre11g03661 | 854 | MobiDBLite | consensus disorder prediction | 15 | 37 | - | - | |
Trre11g03661 | 854 | MobiDBLite | consensus disorder prediction | 520 | 559 | - | - | |
Trre11g03661 | 854 | MobiDBLite | consensus disorder prediction | 90 | 131 | - | - | |
Trre11g03661 | 854 | MobiDBLite | consensus disorder prediction | 353 | 377 | - | - | |
Trre11g03661 | 854 | MobiDBLite | consensus disorder prediction | 353 | 424 | - | - | |
Trre11g03661 | 854 | MobiDBLite | consensus disorder prediction | 489 | 559 | - | - | |
Trre11g03661 | 854 | MobiDBLite | consensus disorder prediction | 150 | 165 | - | - | |
Trre11g03661 | 854 | Pfam | Zinc finger, C3HC4 type (RING finger) | 800 | 847 | - | - | |
Trre11g03661 | 854 | SUPERFAMILY | RING/U-box | 790 | 848 | - | - | |
Trre11g03661 | 854 | MobiDBLite | consensus disorder prediction | 92 | 128 | - | - | |
Trre11g03661 | 854 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 1 | 854 | - | - | |
Trre11g03661 | 854 | MobiDBLite | consensus disorder prediction | 639 | 706 | - | - | |
Trre11g03661 | 854 | CDD | mRING-HC-C3HC5_NEU1 | 803 | 852 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre11g03661 | Trre-Chr11 | 49903813 | 49909842 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre11g03661 | 803 | 849 | C3H Transcription Factor Family | AT3G06140 | 42.553 | 6.13e-07 | 50.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre11g03661 | - | - | gmx:100804887 | 1002.28 |