Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03657 ATGGCGAAAGGAACAGATTCCGATGAGTTTATGGTTCTTTCTAGGGTTAGAACAGGTTTGAAGAGAGAGTTTGCATTTGCAATGAAGGCACAATCTGAGATCGATGGTTCTTTGGGTAGAACAAGGGGTGGTAGTAAGAACCGGAATGAGGCTCCGGTTCAGGAAATTCCGGTTGGGAAAAAACCGAGAAAAACCGGTTTAGAAGATGTGGGGGGTGTAATGAGTGAAGAAGAGGCTAAAAGTGATGTTGTGGATTTTGTTAGTGATGATGAACCTAGGGTTTTGATTGGTGAATTGGAATCTGTTAAAAGTGTTGTTGAAACTGTGAATGATGATGATGAAACACTTTTGGTTGATGAGAATTTGAAGGAAGAAAATGATAAAGAGAAAGTTGTGAATGAAATTGAAATGGAAATTTGTGAAACAAAAGAGGAACAAAAAGAGGATAAAAATAATACCCTTTGTGATGATGTTGCTAATGTTAGTGTTAAGAAAAAGAAGAAGGTTTCTCCTTTGGAGAAACCAATGAGAAGGTTTACAAGATCAGCATTGAAACAAAAAGATGAAGAAAATAAGGATAATGTTGTTGGAATGGATGATAATGTTGTTAGAAGGGAAACTGATGTTGTGGCAACACCGACTCCGATGAAATTGTCTAAGTCTGGTTTGAAGAGGTTTCCTGTCAAGTTAAAGGATCTTTTGGCTACTGGGATTCTTGAAGGGTTGAAAGTGAAATACATCAAGGGACAGAAGGCGCGTAAACCTGGAGAAAAAGAGTTGCCAGGAGTGATTAAAGATTCTGGGGTTTTGTGCTTTTGTGATAGTTGTAAGGGGACTAAGGTTGTCACGCCGACTGTTTTTGAGTTGCATGCTGGTAGTGCTAATAAACGTCCACCGGAGTATACTTACCTTGAGAATGGAAGACCCCTTCGTGATGTCATGAATGCATGTTGTGGTTTATCGTTGGATAAGTTGGATGAAGCTGTCCAATTGGTACTTGGTGATTTCATTATGCAGAAATCTAACATCTGTTTCAGTTGCAGAGGGCCAATTTCTGAATCTAGTAATGGTGTGTCGAAACTAGTATGCAATTCATGCATGGAGATGAATGAGGCTCAAACTAGTAGCCAACTTCAAACAGCAGCAACATGCAGTAAAAGTATTCCCCCAGTAGCTCAACCCAGATCACCAGAAACAGTAGTAGTTCCAGAGTCATTAGACACTGGGTTGGAGGTTCCAAACTCATTAAACACTGAGATGGCGGTTCCAAACTCGTTGAACAGCGAAATGGCGGTTCCAGAGTCATCTAACACCCAGATGGTTCCAAAGGCATTAAGCACTAGGATGAAGCAGAGCGCATCTCGTGGCAAGAGTCGGGGAAAATTAACTAGAAAGGATCTAGGGTTGCACAAGTTGGTATTTGAAGAGGACGTGTTAGAAAATGGAACTGAATTAGCTTACTATTCTCATGGAAAGAAACTATTGGTCGGTACGAAACAGGGATACGGAATTAGATGTTCCTGTTGCGATATGGAGATTAGTGCTTCTCAGTTTGAAGCTCATGCTGGATGGGCATCTCGACGCAAGCCTTACCTGCACATTTATACATCTAATGGAGTCTCACTACATGAGTTGTCCCTCAATATATCTAAAGATCGGAGATTTTCTGCCAGTGATAATGATGACCTTTGCAGCATATGTCAAGATGGAGGGGATCTTTTGTGTTGTGATGGATGCCCAAGGGCTTTTCACATAGATTGTGTGCCTCTTCCAGGCATTCCCAGTGGATCTTGGTATTGTAAATATTGCCAGAATAATTTCCAGATGGAGAGTAATGTGCAACGTAATAAGAATGCTCTCGCAGCTGGAAGGATTGAAGGTGTTGATCCTTTAGAACAAATAAACCGAAGATGCATTCGGATTGTCAAAGGTGTACCTGTTGGCCATGGGGGATGTGCCTTGTGCGGATGTCATGATTTCACTAAAATGTTTGGTCCTCGAATAGTAATGATTTGTGATCAGTGTGAGAGGGAATTTCATGTCGGGTGTTTGAAGGAGCATAACATGCAGAATTTAGAGGAATTGCCTGAAGGGGATTGGTTCTGCAGCCCAAGTTGCAGTCATATTCATTCTTCTCTAGTGAATTTGGTCACTTCTGGGGAGAATAGTCTCCCGGATTCTAGTCTAAGTTTGATAAAAAAGAAGCTTGACAAGTGTGCTAAAGAGAAAGGTGCAGACACCGGCACTGAAGCAAAAGGTGCAGACAGTGGTGCTGAAGCGAAGGGTGCAGACACCGTCGGTGAAGAGAAGGGTGCTGACACTGGCGCCGAAGAGAAGGGTGCTGACACTGGCGCCGAAGAGAAGGGTGCTGGCACTGGCGCTGAAGAGAAGGGTGCTGACACTGGCGCCGAAGAGAAAGGCACTGACACTGGCACTGAAGAGAAAGGCGAAGACACTGGCAGTGAAGAGGAAAGTGTAGACACTGGCGTTGATGAAGAGAAAGGCGCATACACTAGTGTTGAAGAGAAAGGTGCAGACACTGGCATTGAAGAGAAAGTTGGAGACACTGGTGTTGATCTTGATATTAAATGGAGGGTTCTAAACTGGAAGTTAGTTGCGTCTGGTGAAAATAAGCAATTGTCTAATGAATATAGGCAAGTGCTTTCAAAGGCTGTTTCCATCTTCCATGAGCAATTTTCTCCTATAGTTGATTCTTCTTCTGGCCGTGATTTTATTCCGACAATGCTGTTTGGAAAGAACATCCGTGGACAAGATTTTGCAGGAATGTACTGTGCAGTACTCACTGTCAACCAAGTTGTTGTTTCTGCTGGAGTATTTCGTGTCTTTGGGCCAGAAGTAGCTGAACTACCGTTGGTGGCAACAGATGCTGAGTACCAAGGACAGGGTTACTTTCAATGCCTGTTTTCTTGCATTGAGAGATTACTTCGATCTTTAAGTGTGAAAAACCTTGTCCTACCGGCTGCTGAAGAAGCTAAATATATATGGACTAATAAATTTGGGTTTACAAAGCTCGAGCTCGATGAGATAAACAGTTATAAGAAATTTTATCGAATGATGGTCTTTCAAGGGACCTCAATACTACATAAGCCTGTTTGTGCACTACCAAGTACTTCTGAGGAGGAAATTGTGTAA 3153 0.424 MAKGTDSDEFMVLSRVRTGLKREFAFAMKAQSEIDGSLGRTRGGSKNRNEAPVQEIPVGKKPRKTGLEDVGGVMSEEEAKSDVVDFVSDDEPRVLIGELESVKSVVETVNDDDETLLVDENLKEENDKEKVVNEIEMEICETKEEQKEDKNNTLCDDVANVSVKKKKKVSPLEKPMRRFTRSALKQKDEENKDNVVGMDDNVVRRETDVVATPTPMKLSKSGLKRFPVKLKDLLATGILEGLKVKYIKGQKARKPGEKELPGVIKDSGVLCFCDSCKGTKVVTPTVFELHAGSANKRPPEYTYLENGRPLRDVMNACCGLSLDKLDEAVQLVLGDFIMQKSNICFSCRGPISESSNGVSKLVCNSCMEMNEAQTSSQLQTAATCSKSIPPVAQPRSPETVVVPESLDTGLEVPNSLNTEMAVPNSLNSEMAVPESSNTQMVPKALSTRMKQSASRGKSRGKLTRKDLGLHKLVFEEDVLENGTELAYYSHGKKLLVGTKQGYGIRCSCCDMEISASQFEAHAGWASRRKPYLHIYTSNGVSLHELSLNISKDRRFSASDNDDLCSICQDGGDLLCCDGCPRAFHIDCVPLPGIPSGSWYCKYCQNNFQMESNVQRNKNALAAGRIEGVDPLEQINRRCIRIVKGVPVGHGGCALCGCHDFTKMFGPRIVMICDQCEREFHVGCLKEHNMQNLEELPEGDWFCSPSCSHIHSSLVNLVTSGENSLPDSSLSLIKKKLDKCAKEKGADTGTEAKGADSGAEAKGADTVGEEKGADTGAEEKGADTGAEEKGAGTGAEEKGADTGAEEKGTDTGTEEKGEDTGSEEESVDTGVDEEKGAYTSVEEKGADTGIEEKVGDTGVDLDIKWRVLNWKLVASGENKQLSNEYRQVLSKAVSIFHEQFSPIVDSSSGRDFIPTMLFGKNIRGQDFAGMYCAVLTVNQVVVSAGVFRVFGPEVAELPLVATDAEYQGQGYFQCLFSCIERLLRSLSVKNLVLPAAEEAKYIWTNKFGFTKLELDEINSYKKFYRMMVFQGTSILHKPVCALPSTSEEEIV 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03657 1050 ProSitePatterns Zinc finger PHD-type signature. 564 603 IPR019786 -
Trre11g03657 1050 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 927 1012 IPR016181 -
Trre11g03657 1050 SUPERFAMILY FYVE/PHD zinc finger 651 704 IPR011011 -
Trre11g03657 1050 CDD PHD1_AIRE 563 603 - -
Trre11g03657 1050 Pfam Tify domain binding domain 499 545 IPR032308 -
Trre11g03657 1050 Pfam Tify domain binding domain 262 317 IPR032308 -
Trre11g03657 1050 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 556 623 IPR013083 -
Trre11g03657 1050 MobiDBLite consensus disorder prediction 762 815 - -
Trre11g03657 1050 MobiDBLite consensus disorder prediction 36 68 - -
Trre11g03657 1050 SMART PHD_3 654 707 IPR001965 -
Trre11g03657 1050 SMART PHD_3 563 604 IPR001965 -
Trre11g03657 1050 Gene3D - 866 1036 - -
Trre11g03657 1050 MobiDBLite consensus disorder prediction 744 850 - -
Trre11g03657 1050 PANTHER AUTOIMMUNE REGULATOR 117 1038 - -
Trre11g03657 1050 Pfam PHD-finger 564 605 IPR019787 -
Trre11g03657 1050 CDD NAT_SF 931 992 - -
Trre11g03657 1050 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 550 627 - -
Trre11g03657 1050 ProSiteProfiles Zinc finger PHD-type profile. 561 606 IPR019787 -
Trre11g03657 1050 MobiDBLite consensus disorder prediction 830 850 - -
Trre11g03657 1050 SUPERFAMILY FYVE/PHD zinc finger 551 604 IPR011011 -
Trre11g03657 1050 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 648 709 IPR013083 -
Trre11g03657 1050 FunFam PHD finger family protein 861 1037 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03657 Trre-Chr11 49851393 49857788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03657 223 738 PHD Transcription Factor Family AT2G36720 42.144 6.38e-134 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre11g03657 TDBD 1.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03657 - - tpra:123896735 1712.2