Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03655 ATGACCACACCTCCAAGCTTTGAAATTGGAAATCAAGGCATGCAAATGCTTCCTATGGTCCATGAAGATTTGATGCCATTGCCAAATTCCATGGAAGGAATTTCAGGATCACCCTCAAATTCTCTTCTCTTCAATCTCTCAATTCTCAAAGAAAAATTCAATCAAGTGCAAAATCTTGTAGGTGTTATTCTCTCCCCAAATCAACAAGACTCATCAACTAATTCAATAGCTATATCCAACATGAATTCCACAATACAAGAAATCATAGTAACTGCCACATCAATCATGTTCACTTGCCAACATATGGCTCTTGGTTTCCCTCAAGGTCAAGGTAATAATTCTAATCCATCCACAAACCAAGAATTTCAAAAACAACAATCAAACATTGGCAACAATAATACAAGCATAGATCTTAGAGGTCAAAGTCAAAGCTTATTTTCTAATAATGAGTCACAAGCATTGGATTGGTTTAGTGAAAGCTATAATAGTAACATTAATATTTATAGGATCAAGGATGATATTGATGATCAAAGGGTTGATCATGAAATTAGTGAAACCAATAATAGTATAAAAGGTTCTAATGAAGATATTTCAACGAAGAACAATTGTGATCGCGTTGAATTAGACGCGACGGATTTATTAGCCAAGTATACACACTATTGTCAAGTTTGTGGTAAAGGGTTTAAAAGGGATGCAAATTTAAGGATGCATATGAGAGCTCATGGTGATGAATACAAGAGTAGTGCAGCATTGAGCAATCCAATCAATAAGATTAATAGTGAGTATTTAATCAGTATGAAAAATAAGAAATATTCATGTCCTCAAGAAGGGTGTAGGTGGAATCAAAAGCATACCAAGTTTCAACCATTGAAATCATTGATTTGTGCTAAGAATCATTACAAGAGAAGTCATTGTCCTAAAATGTATGTGTGCAAAAGGTGCAATTTGAAGCAATTTTCTGTGCTTTCTGATTTAAGGACACATGAGAAACATTGTGGTGATCTTAGGTGGCAATGCTCATGTGGCACTACCTTTTCTAGGAAAGATAAGCTTATGGGGCATGTTGGTTTGTTTGTGGGACATCACCCAGTTATCAATGGTTTGTCATATAGTACTCACACAAATTAG 1128 0.3511 MTTPPSFEIGNQGMQMLPMVHEDLMPLPNSMEGISGSPSNSLLFNLSILKEKFNQVQNLVGVILSPNQQDSSTNSIAISNMNSTIQEIIVTATSIMFTCQHMALGFPQGQGNNSNPSTNQEFQKQQSNIGNNNTSIDLRGQSQSLFSNNESQALDWFSESYNSNINIYRIKDDIDDQRVDHEISETNNSIKGSNEDISTKNNCDRVELDATDLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKSSAALSNPINKINSEYLISMKNKKYSCPQEGCRWNQKHTKFQPLKSLICAKNHYKRSHCPKMYVCKRCNLKQFSVLSDLRTHEKHCGDLRWQCSCGTTFSRKDKLMGHVGLFVGHHPVINGLSYSTHTN 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03655 375 Gene3D Classic Zinc Finger 217 289 - -
Trre11g03655 375 SMART c2h2final6 309 331 IPR013087 -
Trre11g03655 375 SMART c2h2final6 219 241 IPR013087 -
Trre11g03655 375 SMART c2h2final6 271 304 IPR013087 -
Trre11g03655 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 219 246 IPR013087 -
Trre11g03655 375 ProSitePatterns Zinc finger C2H2 type domain signature. 221 241 IPR013087 -
Trre11g03655 375 SUPERFAMILY beta-beta-alpha zinc fingers 217 243 IPR036236 -
Trre11g03655 375 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 37 366 IPR044300 GO:0010044|GO:0010447
Trre11g03655 375 Gene3D Classic Zinc Finger 307 356 - -
Trre11g03655 375 MobiDBLite consensus disorder prediction 107 134 - -
Trre11g03655 375 FunFam Zinc finger protein 574 218 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03655 Trre-Chr11 49845303 49846493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03655 39 364 C2H2 Transcription Factor Family AT5G22890 51.051 6.90e-111 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre11g03655 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03655 - - psat:127082139 602.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03655 11 49845303 49846493 Trre11g03655 11 49845303 49846493 ECH