Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03653 ATGGACATGGAAGGAATTTTAGGCATGAAGGAACATGGTAATGATGCAAGTCACCTCATCAAAGGGAAGCGAACGAAAAGGCGATTGAGGCAGTTGTCACCTTGTACAGTGGCAACTACCACGCTTACATCAAGTTGTTCGAGTGTCACAGGAGGTGGTGGATCTTTTTCATCCACCACCTTCGATGACACTGAACAAGAAGAGGAAGCAGATATGGCTAATTGTTTGATTCTTCTAGCCCAAGGAAGAACCGGAGGAGGAGAGAATCAATATCGACGTGCTCAGGACCACCACTACGACAACAAACACCAACAACAAGTGGACGGTTATAACAAGATAGCAACAACTGAAAAAGTAACAAAAAACGGTTATGAAAGTTATGAGTGCAAAACATGTAACCGTTTTTTTCATTCATTTCAAGCGTTGGGTGGACATAGAGCAAGTCACAAGAAACCAAAGATGAAAGAAGAAAAACAATCTTCGCCTCCTCAGCCGCGACAAATCGCTACCACAACAGGTGAATTTGAAGAAGAAAACAACCAAATTCATACCAAAAATATTACAACTATCAATCCTATTGTTCCTCCTGTTTCGCTTGAATTAAGGTGTGGTGTTAATATTAATTTCAAGCCCAATAAGCTCAATAAGATTCATGAATGTTCGATTTGCGGCGCGGAATTCACATCAGGTCAAGCATTGGGTGGTCATATGAGGAGACATAGAGCTTCTATTGATAAAAGTAACAACAAAAACAACAACGTTGTAGCTTTTGAAGGTGTTCATGTTAAGTCTAGGAATGTTCTAGAATTGGATCTTAATTTTCCGGCACCGGAGGAAGATCTCTCGGATTCGACGTTTCAGTTTCCGGCGATGGTAGGGTGCCATTATTAG 891 0.4119 MDMEGILGMKEHGNDASHLIKGKRTKRRLRQLSPCTVATTTLTSSCSSVTGGGGSFSSTTFDDTEQEEEADMANCLILLAQGRTGGGENQYRRAQDHHYDNKHQQQVDGYNKIATTEKVTKNGYESYECKTCNRFFHSFQALGGHRASHKKPKMKEEKQSSPPQPRQIATTTGEFEEENNQIHTKNITTINPIVPPVSLELRCGVNINFKPNKLNKIHECSICGAEFTSGQALGGHMRRHRASIDKSNNKNNNVVAFEGVHVKSRNVLELDLNFPAPEEDLSDSTFQFPAMVGCHY 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03653 296 ProSitePatterns Zinc finger C2H2 type domain signature. 129 149 IPR013087 -
Trre11g03653 296 MobiDBLite consensus disorder prediction 143 181 - -
Trre11g03653 296 ProSitePatterns Zinc finger C2H2 type domain signature. 220 240 IPR013087 -
Trre11g03653 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 218 245 IPR013087 -
Trre11g03653 296 MobiDBLite consensus disorder prediction 161 181 - -
Trre11g03653 296 Pfam C2H2-type zinc finger 218 242 - -
Trre11g03653 296 Pfam C2H2-type zinc finger 127 152 - -
Trre11g03653 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 127 154 IPR013087 -
Trre11g03653 296 SMART c2h2final6 218 240 IPR013087 -
Trre11g03653 296 SMART c2h2final6 127 149 IPR013087 -
Trre11g03653 296 PANTHER ZINC FINGER PROTEIN ZAT5 62 281 - -
Trre11g03653 296 Gene3D Classic Zinc Finger 124 240 - -
Trre11g03653 296 SUPERFAMILY beta-beta-alpha zinc fingers 126 240 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03653 Trre-Chr11 49823564 49824454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03653 6 296 C2H2 Transcription Factor Family AT2G28200 36.086 1.01e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre11g03653 zf-C2H2_6 1.6e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03653 - - psat:127086554 341.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03653 11 49823564 49824454 Trre11g03653 11 49823564 49824454 ECH
Trre11g03653 11 49823564 49824454 Trre7g01530 7 11519543 11520427 ECH
Trre1g02508 1 20357901 20358860 Trre11g03653 11 49823564 49824454 ECH
Trre11g03653 11 49823564 49824454 Trre7g01530 7 11519543 11520427 PCT