Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03650 ATGAACTCAAATATGGATATTGTTAACCAAGACTCACTAGTTTCCACTAATAATTTTGAGCTTCACGACTTCATTGATGAACCAAACTTTGATCAATTTATCGATTTAATTCGAGGTGAGAATGAAGATGCAATATGTAACTTTGGTTCTGACCTAATCAATGATTGTTTCATTGATAATAATCATCATGAGCTTCTTTCAATTCCTCCAAACCCATTAATATTTGATCACAACAGCAACAACTATAGTAATATTGTGAATGTGTATGATCCAAGCTCTAGCACAATTGGATCCTTCTCTTGTTATGATGGGGAGATTAAGGGAGAAGGAGAAAATGATGGAGACGATTCTTCGGCACTAACAATCACGACCACCGCAATTGATGATGGCAAACCTAGGGCTAAAACCGATAGGTCTAAGACACTCATTTCTGAGAGGAGAAGGAGAGGTCGAATGAAGGATAAGCTTTATACGTTGCGTTCTTTGGTTCCCAACATTACAAAGATGGATAAGGCCTCTATAATTGGAGATGCAGTATCATATGTGCATGACCTTCAAGCACAATCTAGGAAGTTGAAGGCTGAGGTTTCAGGACTTGAAGCATCCTTATTAGTGTCTGAAAATTATCAAGGATCAATTAAAAACACCATTAAAGCTCAAAACCATCCCATTTGCAAGAAAATTATTCAGGTGGACATGTTCCAAGTGGAGGGAAGAGGATATTATGCAAAAATATTGTGCAATAAAGGAGAAGGAGTAGCTGCTTCATTGTATAAGGCAATTGAATCTCTTGAAAATTTCAATGTTCAAAATTCAAATTTGGCTACGGTTTGTGACAATTTTCTACTTACATTTACATTGAATGTAAAAGGTTGTGAACCAGAAATGAACCTTCAAAATTTGAAGCTATGGGTGGCTGGTGCTCTTTTGAATCAAGGCTTTGAATTCATGCCATCCTTTTGA 963 0.3655 MNSNMDIVNQDSLVSTNNFELHDFIDEPNFDQFIDLIRGENEDAICNFGSDLINDCFIDNNHHELLSIPPNPLIFDHNSNNYSNIVNVYDPSSSTIGSFSCYDGEIKGEGENDGDDSSALTITTTAIDDGKPRAKTDRSKTLISERRRRGRMKDKLYTLRSLVPNITKMDKASIIGDAVSYVHDLQAQSRKLKAEVSGLEASLLVSENYQGSIKNTIKAQNHPICKKIIQVDMFQVEGRGYYAKILCNKGEGVAASLYKAIESLENFNVQNSNLATVCDNFLLTFTLNVKGCEPEMNLQNLKLWVAGALLNQGFEFMPSF 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03650 320 Pfam Helix-loop-helix DNA-binding domain 143 186 IPR011598 GO:0046983
Trre11g03650 320 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 17 312 - -
Trre11g03650 320 Gene3D - 128 202 IPR036638 GO:0046983
Trre11g03650 320 Coils Coil 182 202 - -
Trre11g03650 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 185 IPR011598 GO:0046983
Trre11g03650 320 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 132 202 - -
Trre11g03650 320 SMART finulus 142 191 IPR011598 GO:0046983
Trre11g03650 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 137 206 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03650 Trre-Chr11 49789908 49791647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03650 12 314 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 50.617 7.45e-97 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre11g03650 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03650 K26214 - gmx:100805451 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03650 11 49789908 49791647 Trre11g03650 11 49789908 49791647 ECH
Trre11g03650 11 49789908 49791647 Trre7g01534 7 11540219 11542062 PCT