Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03642 ATGTCACAATCCATGGCGCTATCTCCATCCTTATCAGAAGGCAAGAAGAAGAAGAAACACACCAACAAACATGGCGACGAAGAACAACAACAACAAACGGAGGAACAACCACAAAACAAACAAGATTTCATGATCAAACCAGAAAAAATATCACCAACAATCGATACCTCAAATTGGCCTATCCTCTTGAAAAACTACGACCGTCTCAATGTCCGTACCGGTCACTACACACCTCTTCCCGCCGGTCATTCACCTCTGAAGCGTCCACTTGCTGATTATCTCAAATACGGTGTTATCAACCTTGATAAGCCTGCAAATCCATCTTCTCATGAAGTTGTTGCTTGGATAAAGCGCATTCTTCGTGTCGAGAAAACCGGTCACAGCGGTACATTGGATCCTAAAGTTACTGGTAATTTGATTGTTTGTATTGACAGAGCAACAAGACTTGTTAAATCTCAACAAGGTGCTGGAAAAGAGTATGTATGTATTGCTCGTCTTCATTCTGCTGTTCCTGATGTTTCTAAGGTAGCTCGTGCTCTTGAAACATTAACTGGTGCTGTTTTTCAAAGACCACCTTTGATTTCTGCTGTTAAAAGACAACTTAGGATTAGAACTATTTATGAAAGTAAAATGCTTGAATATGATGCTGAAAGACATTTAGTTGTTTTTTGGATTTCGTGTGAGGCGGGTACTTATGTTAGGACTATGTGTGTTCATTTGGGTTTAATTCTTGGTGTTGGTGGTCATATGCAAGAGCTTAGGAGGGTTAGGTCAGGGATTATGGGTGAGAAAGATAATATGGTTTCTATGCATGATGTTATGGATGCTCAATGGATTAATGATAATAATCGCGATGAGACTTATTTGAGGAGGGTTGTTATGCCTTTGGAGGTACTTTTGACTAGTTATAAGAGATTAGTTGTTAAGGATTCGGCTGTTAATGCTATTTGTTATGGTGCTAAGTTGATGGTTCCGGGGTTACTTAGGTTTGAGAATGATATTGAAGCTGGTGAGGAGGTTGTTCTTATGACTACTAAGGGTGAAGCTATTGCTCTTGGGATTGCTGAGATGACTACTGCTGTTATGGCTACTTGTGATCATGGTGTTGTTGCTAAGATTAAGAGGGTGGTTATGGATCGTGATACTTATCCGAGGAAATGGGGTTTGGGTCCTAGGGCTTCGATGAAGAAGAAGCTGATTGCTTCAGGGAAGTTGGATAAGCATGGGAAGCCAAATGAGAGTACTCCTCAGGAGTGGATGAGGAATGTTGTTTTGCCTACCGGTGGGGATAGTGTTATTGCAGGTATGGCGGCTTCTACTGAAGATGTGAAGCAAGAGGTTGCTGATGGGGAAGGGCGTAAAAGAAAGAAACATGATTCTGCTGATAGCCCTGCTCCTGCTAAGAAGTCCAAAGTTGATGACGAAGAAAAAGTTAAGACCGAGAAAGTAGATGAAGCAGCTGTGGAGGTTGAAGTTGAGAAGTCAGACAAGAAGAAGAAAAAGAAGAAGGATAAAGAGAATGGCGATGTGGCATCTTCTGATGAGGAGAAGGGTGAAAAGGAGAAGAAAAAGAAGAAAAAGGGTGAAGTTGGTTCTCCTGAAGTAGACAAGTCCGAGAAGAAGAAAAAGAAGCAAAAGGAAAAGAGCGAAGATGATTCCCCTAATGTCGACAAATCTGAGAAGAAAAAAAAGAAGAAAGACAAAGAAGCCAAAGATAATGCTGCAGAGATAAGTAATGGAAAGGATGAGAGCAATGCTGAAAAGAGTGAAAAGAAGCACAAGAAAAAGAAAAACAAAGATGCTCAAGAAGAATAA 1815 0.4077 MSQSMALSPSLSEGKKKKKHTNKHGDEEQQQQTEEQPQNKQDFMIKPEKISPTIDTSNWPILLKNYDRLNVRTGHYTPLPAGHSPLKRPLADYLKYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKMLEYDAERHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIMGEKDNMVSMHDVMDAQWINDNNRDETYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMVPGLLRFENDIEAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIASGKLDKHGKPNESTPQEWMRNVVLPTGGDSVIAGMAASTEDVKQEVADGEGRKRKKHDSADSPAPAKKSKVDDEEKVKTEKVDEAAVEVEVEKSDKKKKKKKDKENGDVASSDEEKGEKEKKKKKKGEVGSPEVDKSEKKKKKQKEKSEDDSPNVDKSEKKKKKKDKEAKDNAAEISNGKDESNAEKSEKKHKKKKNKDAQEE 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03642 604 SUPERFAMILY Pseudouridine synthase 56 301 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Trre11g03642 604 Coils Coil 584 604 - -
Trre11g03642 604 Gene3D Pseudouridine synthase 89 295 - -
Trre11g03642 604 MobiDBLite consensus disorder prediction 438 604 - -
Trre11g03642 604 CDD PseudoU_synth_hDyskerin 95 277 - -
Trre11g03642 604 SUPERFAMILY PUA domain-like 303 384 IPR015947 -
Trre11g03642 604 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 17 579 IPR004802 GO:0006396
Trre11g03642 604 MobiDBLite consensus disorder prediction 1 51 - -
Trre11g03642 604 Pfam DKCLD (NUC011) domain 56 113 IPR012960 -
Trre11g03642 604 Gene3D PUA domain 56 387 IPR036974 GO:0003723
Trre11g03642 604 Pfam PUA domain 304 376 IPR002478 GO:0003723
Trre11g03642 604 FunFam H/ACA ribonucleoprotein complex subunit CBF5 89 295 - -
Trre11g03642 604 Pfam TruB family pseudouridylate synthase (N terminal domain) 117 233 IPR002501 GO:0006396
Trre11g03642 604 MobiDBLite consensus disorder prediction 444 604 - -
Trre11g03642 604 NCBIfam uncharacterized domain 2 299 375 IPR004521 GO:0003723
Trre11g03642 604 CDD PUA_Cbf5 302 376 - -
Trre11g03642 604 NCBIfam RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 63 388 IPR004802 GO:0006396
Trre11g03642 604 SMART pua_5 304 378 IPR002478 GO:0003723
Trre11g03642 604 MobiDBLite consensus disorder prediction 12 33 - -
Trre11g03642 604 ProSiteProfiles PUA domain profile. 303 378 - -
Trre11g03642 604 SMART DKCLD_2 55 113 IPR012960 -
Trre11g03642 604 Pfam tRNA pseudouridylate synthase B C-terminal domain 234 300 IPR032819 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03642 Trre-Chr11 49674508 49676322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03642 24 471 NAC Transcription Factor Family AT3G57150 82.561 0.0 752
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03642 K11131 - gmx:100806355 791.571