Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03637 ATGGCGGAGAGAATTTGTATATCTAGCGAAGACGTCAAGATTGAAGGTAGCGGCGGTAATATTGGAGCAAAACCCTCTTTGCTAGGTCGAAGAAAACGTTCGTTCTTCGACTTAAACGAAGAAGCTGTGGATGATATTGGAAATGATGATGATGTTGATAAGATACTAATAAGTGATGGTATTTGTGGTGAGATAAGCAACAATAACAATGAGATATCATCACAATCACAAGAAGAGAATTTGAGTAGCAATAATAATTCAAGTGAAGAAGGAAAAGGACGTGGAAGTACAGTAAGACAATATGTGAGGTCCAAAATGCCTAGGCTTCGTTGGACTCCTGATCTTCATTTATCTTTTGTGCATGCTGTTGAGAAGCTTGGAGGACAAGAAAGAGCAACACCCAAGTTGGTTCTCCAGTTGATGAATGTAAGAGGACTTAGCATTGCACATGTGAAGAGTCATTTGCAGATGTATCGGAGTAAAAAACTTGATGAGTCTGGCCAAGTTTTATCCCAAAAAAATAGGGCAATGCAAGGAAGGAATCATCACATTTTGGATATATATGGAAGATTTAATGTACAAGGACAATTTGGTGTTGATAACAACAACTATTTGCACCCATCGTCTCAGCTAATGAAACAACCATATAATGAAATCAAAGGTCATTCCACTTCAAGATTTCATGAGAGTGAGGTTTTCAATAATAATCACGTGATCTTAAGATCAAGTTCAGTATGGGACAAAGATATATATAAGACAAGTTCACATATATTTGATGTAAAGGATGCAATAACAAGAAATAATGGACCTATTAATTCTAGCCAAATATATCAATTGGTACCTGAAGAAAAGAAGTGGCCTTCACAAGGAACTGAAAATCACAAGGAATTTATAAGCTTGTCTCGTGATGACCAACATTTTCCATGGAACTCATATTCTACTCCTGTATTCACTAAGGTATATGATAAAAAAGATGGAATGCAAGAATTCATACACCAAAATCAAGTATTGAAGCAAGGTCGTGTCACAGTCCAATTAAAAAGGTTGAATGAGAAGAAAGAGTACTCGCCAAGTTTCTTAGAGCTAAAGCTAAGTCGAGACTCAGAAATCAATGTTAAGGGTGAAACGAATATAGATCCAAAAGGCGAACAAGAAGCACACACAATTCTCTCTCTTTCGTTGTTCTCTTCCTCGTCGACCTCGAATTCAAGGTTATGA 1218 0.3686 MAERICISSEDVKIEGSGGNIGAKPSLLGRRKRSFFDLNEEAVDDIGNDDDVDKILISDGICGEISNNNNEISSQSQEENLSSNNNSSEEGKGRGSTVRQYVRSKMPRLRWTPDLHLSFVHAVEKLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDESGQVLSQKNRAMQGRNHHILDIYGRFNVQGQFGVDNNNYLHPSSQLMKQPYNEIKGHSTSRFHESEVFNNNHVILRSSSVWDKDIYKTSSHIFDVKDAITRNNGPINSSQIYQLVPEEKKWPSQGTENHKEFISLSRDDQHFPWNSYSTPVFTKVYDKKDGMQEFIHQNQVLKQGRVTVQLKRLNEKKEYSPSFLELKLSRDSEINVKGETNIDPKGEQEAHTILSLSLFSSSSTSNSRL 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03637 405 Gene3D - 106 163 - -
Trre11g03637 405 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 103 163 IPR017930 -
Trre11g03637 405 MobiDBLite consensus disorder prediction 67 99 - -
Trre11g03637 405 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 83 212 IPR046955 GO:0003700
Trre11g03637 405 FunFam Myb family transcription factor 105 163 - -
Trre11g03637 405 NCBIfam myb-like DNA-binding domain, SHAQKYF class 107 162 IPR006447 GO:0003677
Trre11g03637 405 SUPERFAMILY Homeodomain-like 105 161 IPR009057 -
Trre11g03637 405 MobiDBLite consensus disorder prediction 67 94 - -
Trre11g03637 405 Pfam Myb-like DNA-binding domain 109 159 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03637 Trre-Chr11 49621220 49624651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03637 98 187 G2-like Transcription Factor Family AT2G42660 65.556 1.25e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre11g03637 Myb_DNA-binding 3.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03637 - - mtr:25487436 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03637 11 49621220 49624651 Trre11g03637 11 49621220 49624651 ECH