Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03621 ATGGCCGCCATGCCGTTGGGGCCGCACCACCATCAACCACCGCAACAAGCACCGTTACCGTTGCCGTTACCTTTACCACCGCCGCAGTTACAACAACAACAACAACAAACACTGAATGAGCCGATGAAAACAACGGCGGTTAGTGGCGTCTCCGATATGAACACTGATAAGGAAATGTCGGCTACTGTGGTTGACAGTAATGATGCAGTCACTGGTCACATAATCTCAACTACCATCGGAGGCAAAAATGGTGAACCTAAACGGACAATCAGTTACATGGCCGAACGTGTTGTTGGAACGGGATCATTTGGGATTGTTTTTCAGGCAAAGTGCTTGGAGACTGGTGAGGCGGTGGCTATAAAGAAGGTTTTGCAAGACAAGCGGTACAAAAATCGTGAACTGCAGTTAATGCGTGTATTGGATCACCCAAATGTAATTTCCTTGAAGCATTGTTTCTTCTCTACAACAAGCAGAGATGAACTTTTTCTTAACTTGGTCATGGAATATGTCCCCGAGACGATGTACCGAGTTCTAAAGCACTACAATAATATCAACCAAAGAATGCCCCTAATCTATGTGAAATTATATACTTACCAAATATTCAGAGGACTAGCATATATCCATACTGTTCCAGGAGTTTGCCATAGGGATGTGAAGCCTCAAAATCTATTGGTTGATCCTCTCACTCACCAAGTTAAGCTTTGCGATTTTGGGAGTGCAAAAGTTCTGGTCAAGGGTGAAGCAAACATTGCATACATATGTTCACGGTACTATCGGGCCCCAGAACTAATATTCGGTGCGACAGAATACACAACTTCTATTGATATCTGGTCAGCTGGTTGTGTCCTTGCAGAACTTCTTCTAGGCCAGCCACTATTCCCAGGAGAGAATCAGGTGGACCAACTTGTGGAAATTATTAAGGTTCTTGGTACTCCAACTCGAGAAGAAATTCGTTGCATGAACCCTAATTATTCCGATTTTAGATTCCCCCAGATTAAAGCTCATCCTTGGCACAAGGTTTTTCACAAGCGCATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTCTTCAATATTCACCAAGTCTTCGTTGCAGTGCACTGGAAGCATGTGCACATCCCTTCTTTGATGAGCTTCGAGAGCCCAATGCTCGGCTTCCTAATGGTCGTCCTCTGCCTCCTCTTTTCAACTTTAAACAGGAATTATCTGGAGCATCCCCTGAACTGATCAATAAACTGATCCCAGAGCATGTCAGACGGCAAACTGGTCTCGGCTTTTCCCATATCCCGGCTAGCACATAA 1302 0.4485 MAAMPLGPHHHQPPQQAPLPLPLPLPPPQLQQQQQQTLNEPMKTTAVSGVSDMNTDKEMSATVVDSNDAVTGHIISTTIGGKNGEPKRTISYMAERVVGTGSFGIVFQAKCLETGEAVAIKKVLQDKRYKNRELQLMRVLDHPNVISLKHCFFSTTSRDELFLNLVMEYVPETMYRVLKHYNNINQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLTHQVKLCDFGSAKVLVKGEANIAYICSRYYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENQVDQLVEIIKVLGTPTREEIRCMNPNYSDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCSALEACAHPFFDELREPNARLPNGRPLPPLFNFKQELSGASPELINKLIPEHVRRQTGLGFSHIPAST 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03621 433 Gene3D Transferase(Phosphotransferase) domain 1 172 419 - -
Trre11g03621 433 SUPERFAMILY Protein kinase-like (PK-like) 91 401 IPR011009 -
Trre11g03621 433 SMART serkin_6 92 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g03621 433 Gene3D Phosphorylase Kinase; domain 1 77 171 - -
Trre11g03621 433 ProSitePatterns Protein kinases ATP-binding region signature. 98 122 IPR017441 GO:0005524
Trre11g03621 433 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 56 421 - -
Trre11g03621 433 CDD STKc_GSK3 87 379 IPR039192 -
Trre11g03621 433 FunFam Glycogen synthase kinase-3 beta 76 171 - -
Trre11g03621 433 ProSiteProfiles Protein kinase domain profile. 92 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g03621 433 Pfam Protein kinase domain 92 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g03621 433 MobiDBLite consensus disorder prediction 11 29 - -
Trre11g03621 433 FunFam Shaggy-related protein kinase kappa 172 419 - -
Trre11g03621 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Trre11g03621 433 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03621 Trre-Chr11 49475675 49479995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03621 96 414 MAP Kinase Gene Family AT3G59790 35.629 4.45e-58 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Trre11g03621 Pkinase 4.9e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03621 K14502 - qsu:111995841 746.117