Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03614 ATGTTACTCTCATGGAGGTCTTTGCTCCTGCAACCATTTAAGGCTATGTTGAGCCGTTTTTCGTTTTCCAATTTGGGCCGGGGAAGTATAACTTCTGGCAGTTCTTCATTTGATTCCAATCGTGTCCATAGCTATGAATATGATGTGTTTATCAGTTTTAGAGGCGTTGACACCCGTAACACTTTTGTTGATCATCTTTATGCTCATCTAACAAGAAAAGGTATTTTCGCTTTCAAGGATGATAAAAGGCTTGAGAAAGGGGAATCCCTTTCGCCGCAACTTCTACAAGCAATTAAAAATTCTCGGATTTGTATAGTTGTTTTCTCTGAAAGATATGCCGAGTCTACATGGTGTTTGGAAGAAATGGCTACTATTGTTGAATGTCGTAGGGATTTGAAACAAACTGTTTTCCCTGTCTTTTATGATATCGATCCATCTCATGTACGAAAACAGACTGGGTTGTACCAGCATGCCTTTGCTTTACACAGGAGTAGATTTAATCATGATCCGAATAAGGTTGTGAGATGGACGGAAGCTATGGTCAATTTAACTGAAGTAGTTGGCTGGGATGTTAGGAACAAGCCAGAGTTTCGAGAGATTAAAAATATTGTTCAGGAAGTAATAAAAATACTGGGTCATAAATTCTCAGGGTTTGCTGATGACCTTATTGGGATACAACCTCGAGTAGAAGACTTAGAAAGCCTTCTGAAATTAAACTCAATTGATGATGAATTCCGAGCTATAGGTATTTGGGGGATGGCTGGAATTGGAAAGACAACTCTTGCTTCCGTGTTGTATGATAGAGTCTCCTATCAGTTTGATGCAAGCTGTTTTATTGAGAATGTAAGCAAAATTTATAAAGAGGGTGGTGCTACTGCTGTAAAGAAACAAATCCTTCGGCAAACCATAGATGAAAAAAACTTAGAGACATACAGCCCTTCTGAAATATCTGGAATTGTACATAAAAGACTTTGCAACAGAAAGTTTCTTGTAGCTCTTGATAATGTTGATCTATTAGAGCAGGTGGAAGAGTTGGCTATAAATCCCGAGTTGCTTGGTAAAGGAAGTAGAATGATCATTACAACCAGGGATATGCATATTCTAAGAGTGTTTGGACCACAGTTATCAATATCTCACAGTTATCTCACCATATATGAGGTTCCACTATTGAATATCAATGATGCTCGCGAACTTTTCTATACAAAAGCCTTCAAAAATGAGGATCCCACTAGCGGATGTGTGAAGCTAATTCCCGAGGTACTAAAATATGCTCAAGGTCTTCCATTAGCAGTTCGAGTAGTGGGTTCTTTCTTGTGTACTCGAAATTCTAACCAATGGAGAGATGCTTTGTATAGATTGAGGAATAATCCAGACAACAAAGTTATGGATGTGCAGTTGAAATCCTTGGGGATTTCGCATGAAGAACATAGCAGCAGTAAGAGGCCTGAAGTCCAGCTTCCTTATAATTGGTATGTTACTGAGGAAGAGGAAAAGTCTAAAATTCTGCTTCGTTATAATTGGCATGTTACTGAGGAAGAGGAAATCGAGAGTAGCGAAGTGAATGTGAAAGAAAGTCATCTCTCGAATATGGGCCTTACCACATAG 1605 0.3888 MLLSWRSLLLQPFKAMLSRFSFSNLGRGSITSGSSSFDSNRVHSYEYDVFISFRGVDTRNTFVDHLYAHLTRKGIFAFKDDKRLEKGESLSPQLLQAIKNSRICIVVFSERYAESTWCLEEMATIVECRRDLKQTVFPVFYDIDPSHVRKQTGLYQHAFALHRSRFNHDPNKVVRWTEAMVNLTEVVGWDVRNKPEFREIKNIVQEVIKILGHKFSGFADDLIGIQPRVEDLESLLKLNSIDDEFRAIGIWGMAGIGKTTLASVLYDRVSYQFDASCFIENVSKIYKEGGATAVKKQILRQTIDEKNLETYSPSEISGIVHKRLCNRKFLVALDNVDLLEQVEELAINPELLGKGSRMIITTRDMHILRVFGPQLSISHSYLTIYEVPLLNINDARELFYTKAFKNEDPTSGCVKLIPEVLKYAQGLPLAVRVVGSFLCTRNSNQWRDALYRLRNNPDNKVMDVQLKSLGISHEEHSSSKRPEVQLPYNWYVTEEEEKSKILLRYNWHVTEEEEIESSEVNVKESHLSNMGLTT 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03614 534 Pfam TIR domain 47 209 IPR000157 GO:0007165
Trre11g03614 534 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 219 465 IPR027417 -
Trre11g03614 534 Gene3D - 43 216 IPR035897 -
Trre11g03614 534 ProSiteProfiles TIR domain profile. 45 211 IPR000157 GO:0007165
Trre11g03614 534 SUPERFAMILY Toll/Interleukin receptor TIR domain 37 188 IPR035897 -
Trre11g03614 534 Pfam NB-ARC domain 242 459 IPR002182 GO:0043531
Trre11g03614 534 Gene3D - 390 473 IPR042197 -
Trre11g03614 534 SMART till_3 46 186 IPR000157 GO:0007165
Trre11g03614 534 FunFam Disease resistance protein (TIR-NBS-LRR class) 43 213 - -
Trre11g03614 534 Gene3D - 219 375 IPR027417 -
Trre11g03614 534 PRINTS Disease resistance protein signature 424 438 - -
Trre11g03614 534 PRINTS Disease resistance protein signature 323 337 - -
Trre11g03614 534 PRINTS Disease resistance protein signature 247 262 - -
Trre11g03614 534 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 472 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03614 Trre-Chr11 49373870 49375769 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03614 44 392 WRKY Transcription Factor Family AT4G12020 27.635 4.96e-30 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03614 - - psat:127091204 731.095