Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03613 ATGGCTACAATTGCTAGTTGTCGTAAAAATTTGGAACGGACAGTTTTTCCTGTTTTTTATGATGTTGATCCATCTGATGTACGAAAGCAAAGTGGGGTATACCAGAATGACTTTGTTTTACACAAGAAAAAATTCAAACGTGATCCAAATAAGGTTGTGAGATGGACAAGTGCTATGAGCAGTTTGGCTGAATTAGTTGGTTGGGATGTCAGGAACAAGCCAGAGTTTCAAGAAATTAAAAATATTGTTCAGGAGGTGATAAAAACACTGGGTCATAAATTCTCAGGGTTTGCTGATGACCTTGTTGGGATACAACCTCGAGTAGAAGCATTAGAAAGACTTTTGAAATTAAGCTCAGAGGATCATGAATTCCGAGTTGTAGGTATTTGGGGGATGGCTGGAATAGGAAAGACAACTCTGGCTTCTGCCTTGTATGATAGAATCTCCAATCAGTTTGATGCAATCTGTTTTATTGAGAATGTAAGCAAAATTTATAGAGATGGTGGTGCTACTGCTGTCCAGAAACAAATCCTCCGGCAAACCATAGATGAAATAAATCTAGAGACATATAACCCTTATGAGATATCTGGAATTATAAGTAATAGACTATGCAAGAGAAAGTTTCTTGTAGTTCTTGACAATGTTGATCTATTGGAGCAAGTGGAAGACTTGGCTATGAATCCTGATTTGCTTGGCACAGGAAGTAGAATGATCATTACAACTAGGGATGTGCATATTCTAAGAGTGTATGGAGAAAGTTTATCAGTAGATTATGTTACATCTGTGTCATATGTTGTGTACGAGGTTCCACTATTGAATAACTATGATGCTCGTAAGTTATTTTATACAAAAGCTTTCAAAAGTAAGAATCCCACTAGCGGATGTGTGAATCTGATTCCAGAGGTACTAAACTATGCTCAAGGTCTTCCAATAGCAGTTCGAGTAGTTGGTTCTTTCTTGTGTACTCGAAATGCTAACCAATGGAAAGATTCATTGAATAGATTGAGGAGTAATCCAGACAAAAAAGTTATGGATGTGCTTCAGGTAGGTTTTGAGGGATTACATTCAGAGGAAAAAGAAATATTTCTGCATATTGCTTGTTTCTTTAAGGGGGAGAAGGAAGATTATGTGAAGCAAATTCTAGATGCTTGTGACTTGCACCCTCTCATTGGAGTTCAATGTTTGGTTGAGAAATCACTCATAACTATTAGAAATCATGAAATTCATATTCATGATCTGTTGCAGGAATTGGGGAAACAAATTGTTCGACAACAGTTTCCAGACGAACCAGGATCGTGGAGTAGATTGTGGCTTTATGAGGATTTCTACACTGTCATGACGACAGAAACGGGTACAAACAAGGTTAAAGCCATAATTCTAGATCAAAAGCAGCATATCTCTGAATATCCTCCATTATTGGCTGATGGATTTTCAATAATGAGGGGACTTAAAATTCTTATATTGTATCATAAGAATTTTTCAGGAAGTCTCAATTTTCTTTCTAACAACTTGCAGTATCTTCTGTGGGATGGTTACCCTTTTGCTTCTTTGCCATTAAATTTTGAGCCGTTACGTCTTGTTGAATTGAATATGCCTTGTAGCCTCATCCAACGTCTATGGGACGGTCATAAGGATCTCCCTTGTTTGAAAAGGGTAGATTTGAGCAACTCCAAATGTCTTGTGGAGACTCCAAATTTTGCAGGAAGTCGGAGACTTGAGCGGCTAGATCTTACAGGATGCATAAACCTATCGTATGTCCATCCATCCATTGGACTTCTGGAAAAAGTTGCTTTCTTGAGTTTGGAAGGCTGCAGCAGTTTGGTCAGGCTCGTTCTTGACGGTGACACTGCATCTAACTTGCATTCTCTCAAAGTTCTACACCTCTCTGGCTGCACAAAACTTGAAACGTTACCAAATTTTACAGGGGTCACAAATCTTGAGTATCTTGATATTGATCAATGTGGGAGCTTATCAGCGATTGATCAATCTATTGGGGATCTTACACAGCTTAAATTCTTGAGTTTAAGAGACTGCACAAATCTTGTCAGTATACCAAAAAGCATCAATTCTATGACTTCTCTTGAAACTCTAGATTTATGTGGCTGCTTAAAACTTGAGAATCTACCCTTTGTAGGAAGCAAATCAGTGTCTGTAGAAAGCATTGGATCCATATCAGTGTCTGCAGAGAATGTTGATCACTCTAATTGTGAACTCATATCTTCTTACTATCTGGATTCTTTGATTTTTTTAGATCTAAGCTTTTGTAATCTAAGTACAGTCCCTGATGCTATCGGAAAGTTAAGGCATTTAGAAAGGCTAAATCTAGAAGGAAACAACTTTATTTCGCTTCCGTCCTCAGTGATGAGGCTTTCCAGTCTAGCGTTTCAATTTTTGCCTGAAATCCCATTGCAGGCTAATTTTCTATTTGGGGGAAGATATTTTAAAACGGTATCTGGATCTCATAATCATAGGTCAGGGTTATATATTTTTAACTGTCCCCTTTTGAATGTTACCGAAGAAGGTCTAAACTTGGCACTTTGGTGGCTGAAAAGATTAGTTAAGAATCCTTGTCATTTCCGGTGTGGCTTTGACATTGTTGTTCCTGGGTTCATATTTCCGAATTGGTTTGATTATCAATTTACGGGATATTCAAGAGTCAGGATAGCAGACTCTGAGTGTGAGTATGACAATTGGATTGGCTTTATCTTTTGTGTTGCATTCGTAGGAAACTGTGGTTCAACATCGTTTGGTTCTTCTCAGTATTCATTTTCCTCCCAGCTTCCACATCCTCTTTATCTTTCTTTTGAAAGTGAACACATGGAAGAAACTTTTGATATACCGCTTCGGTTAGACCTGAACAAGGGTGATGGTTCAATTGCAGAACATCTCTGGCTAATCTATATCTCTAGGCCCCACTGCCATTTTGTAACAACAGGAGCACAGATCACATTTAAAGCTCATCCAGACCTGGAGCTGAAACAATGGGGATTTCAAATGGTATTCGAGCAGGATATCTCTGGTCCATTAAATTATGGGATAGATGATGTTCGTCAACGATTCTATCTTGACTTGGATCATGTAGATGAAAGTAGCAGCAGAAGGAAACATGAAATCCAGCTTCCTTATAATTGGTATGTAGATGAAAAAGATATAAAACCTAAAATACAGCTTCGTTATAATTGGCATGTTACCGAGGAAGAGGAAATCGAGAATGCAGAATTGGATAACAAAGTAAATCAGCTCTTGAAAATGCACCATACTGATAAAAGAAGGCCCATTTACAGAAGGATTCTAGAAGGTATACGCGGTGGGGCCAGTCGGAGGGAAAGAGAATTAGTCAGCGATGTCGGAGCATTTCCTGGGGGATTCTTTTAG 3375 0.3843 MATIASCRKNLERTVFPVFYDVDPSDVRKQSGVYQNDFVLHKKKFKRDPNKVVRWTSAMSSLAELVGWDVRNKPEFQEIKNIVQEVIKTLGHKFSGFADDLVGIQPRVEALERLLKLSSEDHEFRVVGIWGMAGIGKTTLASALYDRISNQFDAICFIENVSKIYRDGGATAVQKQILRQTIDEINLETYNPYEISGIISNRLCKRKFLVVLDNVDLLEQVEDLAMNPDLLGTGSRMIITTRDVHILRVYGESLSVDYVTSVSYVVYEVPLLNNYDARKLFYTKAFKSKNPTSGCVNLIPEVLNYAQGLPIAVRVVGSFLCTRNANQWKDSLNRLRSNPDKKVMDVLQVGFEGLHSEEKEIFLHIACFFKGEKEDYVKQILDACDLHPLIGVQCLVEKSLITIRNHEIHIHDLLQELGKQIVRQQFPDEPGSWSRLWLYEDFYTVMTTETGTNKVKAIILDQKQHISEYPPLLADGFSIMRGLKILILYHKNFSGSLNFLSNNLQYLLWDGYPFASLPLNFEPLRLVELNMPCSLIQRLWDGHKDLPCLKRVDLSNSKCLVETPNFAGSRRLERLDLTGCINLSYVHPSIGLLEKVAFLSLEGCSSLVRLVLDGDTASNLHSLKVLHLSGCTKLETLPNFTGVTNLEYLDIDQCGSLSAIDQSIGDLTQLKFLSLRDCTNLVSIPKSINSMTSLETLDLCGCLKLENLPFVGSKSVSVESIGSISVSAENVDHSNCELISSYYLDSLIFLDLSFCNLSTVPDAIGKLRHLERLNLEGNNFISLPSSVMRLSSLAFQFLPEIPLQANFLFGGRYFKTVSGSHNHRSGLYIFNCPLLNVTEEGLNLALWWLKRLVKNPCHFRCGFDIVVPGFIFPNWFDYQFTGYSRVRIADSECEYDNWIGFIFCVAFVGNCGSTSFGSSQYSFSSQLPHPLYLSFESEHMEETFDIPLRLDLNKGDGSIAEHLWLIYISRPHCHFVTTGAQITFKAHPDLELKQWGFQMVFEQDISGPLNYGIDDVRQRFYLDLDHVDESSSRRKHEIQLPYNWYVDEKDIKPKIQLRYNWHVTEEEEIENAELDNKVNQLLKMHHTDKRRPIYRRILEGIRGGASRRERELVSDVGAFPGGFF 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03613 1124 Gene3D - 272 355 IPR042197 -
Trre11g03613 1124 Gene3D Ribonuclease Inhibitor 717 809 IPR032675 -
Trre11g03613 1124 Pfam C-JID domain 872 1005 IPR045344 -
Trre11g03613 1124 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 365 IPR027417 -
Trre11g03613 1124 Gene3D - 98 255 IPR027417 -
Trre11g03613 1124 SUPERFAMILY L domain-like 424 836 - -
Trre11g03613 1124 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 619 709 IPR044974 GO:0006952
Trre11g03613 1124 Gene3D Ribonuclease Inhibitor 615 716 IPR032675 -
Trre11g03613 1124 Coils Coil 1064 1084 - -
Trre11g03613 1124 Pfam Leucine Rich Repeat 526 542 IPR011713 -
Trre11g03613 1124 SMART LRR_typ_2 744 766 IPR003591 -
Trre11g03613 1124 SMART LRR_typ_2 620 644 IPR003591 -
Trre11g03613 1124 SMART LRR_typ_2 767 790 IPR003591 -
Trre11g03613 1124 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 68 IPR035897 -
Trre11g03613 1124 Gene3D - 1 95 IPR035897 -
Trre11g03613 1124 Pfam NB-ARC domain 114 341 IPR002182 GO:0043531
Trre11g03613 1124 PRINTS Disease resistance protein signature 126 141 - -
Trre11g03613 1124 PRINTS Disease resistance protein signature 618 634 - -
Trre11g03613 1124 PRINTS Disease resistance protein signature 202 216 - -
Trre11g03613 1124 PRINTS Disease resistance protein signature 306 320 - -
Trre11g03613 1124 Gene3D Ribonuclease Inhibitor 433 614 IPR032675 -
Trre11g03613 1124 Pfam TIR domain 3 93 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03613 Trre-Chr11 49368061 49372213 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03613 12 816 WRKY Transcription Factor Family AT4G12020 28.521 4.12e-82 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03613 - - psat:127091204 1595.87