Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03612 ATGGATTCAACCACAAACATTTCAGATACTTTACGCTCATTGAGGTCCATTGTTCTGCAACCGTTTTGTGCGCTGTTGGATTGCTTATTATTTTCCAATTTGAGGCAAGGAGACATAGATTTCAATTCTTCTATGGACTATAATAACTATCAAAGCTATAAATACGACGTGTTCATCAGTTTTAGAGGTCCTGACACCCGCAACAGTTTTGTTGATCATCTTTATGATCATCTAGCAAGAAAAGGTATCTTCACCTTCAAGGATGACCAAAGGCTTGAGAAAGGAGAATCCCTTTCGCCACAACTTCTACAAGCAATTCAAAACTCACGGATTTCTATTGTTGTCTTCTCTGAAAGATATGCCGAGTCAACATGGTGTTTGGAAGAGATGGCTGCTATTGCTGAATGTCGTGAAGAATTCAAACAAACAGTTTTCCCTGTTTTTTATGATGTCGATCCATCTCATGTACGAAAACAAAATGGGGTATACCAGAATGACTTTGTTTTACACAAGAAGAAATTTAAACATGACCCAGATAAGGTTATTAGATGGGTGAGAGCTATGGCTGATTTAGCTGAATTAGTTGGCTGGGATGTTAGGAACAAGCCAGAGTTTCGAGAAATCCAAATTATTGTTCAGGAGGTGATAAAAACACTGGGTCATAAATTCTCAGGGTTTGCGGATGACCTTATTGGGATAAAACCTCGAGTAGAAGCAGTGAAAAGTCTTTTGAAATTAAGCTCAGAGGATGATGAATTTCGAGTTGTAGGTATTTTGGGGATGGCTGGAATCGGAAAGACAACTATAGCGTCTGTCTTGTATGATAAAATATCCTCTCAGTTTGATGCAAGTTGTTTTATTGAGAATGTAAGCAAAATATATCGAGATGGTGATGCTATTGCTGTACAGAAACAAATCCTTCGGCAAACCGTAGATGAAATAAATCTAGAGACATACAGTCCTTCTGAAATATCTGGAATTGTAAGTAAAAGAATGTTCAACAGAAAGTTTCTTGTAGTTCTTGACAATGTTGACATATTTGAGCAAGTGGAAGAATTGGCTATAAATCCTAGATTGCTTGGTCCAGGAAGTAGAATGATCATTACAACTAGGAATGCGCATATTCTAAAGGTGTATGAAGAACAGTTATCTTTATCTCATGATAGATGCGTGTCATATGAGGTTCCACTATTGAATAGCACTGAGGCTTGCAAACTTTTTTATAGAAAAGCTTTCAAAAGCAAGGATCTCACTAGCGAATGTGTGAAGCTTACTACCGAGGTACTGAAATATGCTCAAGGTCTTCCTTTAGCAGTTCGAGTAGTGGGTTCTTTCTTGTGTACTCGAAATGTTAACCAGTGGGGAGATGCAATGTATAGATTGAGAAATAATCCAGATAACAAAGTTATGGATGTGCTTAAGGTAAGTCTTGAGGGATTACATTCAAATGACAGAGAAATATTTCTGCATATTGCATGTTTCTTTAAAGGGGAGAAGGAAGATTATGTGAAGCGAATTCTAGATGCTTGTGGGTTGCATCCTCATTTTGGAATTCAAAATTTGATTGAGAGGTCACTCATAACTATTAGAAATCAGAAAATTCATATGCATGAGATGTTGCAAGAATTGGGGAAGAAAATTGTTCGGCAACAGTTTCTTGATGAACCAGGATCTTGGAGTAGATTGTGGCTTTATGATGATTTCTACCATGTCATGATGACAGAAACGGGAACAAACAAGGTTAAAGCCATCATTCTAGATCAAGAAGAACATATCTCTGAATATCCTCTGTTGAGAGCTGAAGGATTGTCAATAATGAGGGGACTTAAAATTCTTATACTATACCATGAGAAATTTTCAGGAAGTCTCAATTTTCTTTCTAACAGATTGCAGTATATTCTGTGGTATGGTTACCCTTTTGCTTCTTTGCCATTAAATTTTGAGCCGTTTTTCCTCGTTGAATTGAATATGCCTTGTAGCAGTATTCAACGACTATGGGACGGTCAGAAGTATCTCCCTTTATTGAAAAGGGTGGATCTGAGCAACTCCAAATATCTTGTGGAGTCTCCAAATTTTGCTGGAAGCCCAAGACTTGAACGGCTAGATTTTACAGGATGCATAAATCTATTGTATGTCCATCCATCCATTGGACTTCTGGAAAAACTTGCTTTCTTGAGTTTTGAAGGCTGCAGCAGTTTGGTCAAACTTGTTCTTGATGGTGACACTGCTTCTAACTTGTATTCTCTCAAAGTTCTACACCTCTCTCGATGCACAAACCTCGAAACCATACCAGATTTTACCGGGGTCTCAAATCTTGAGTATCTCGATATTGATCAATGTGCGAGTTTATCAATGATTGGTCATTCTATTGGGGATCTTACACAACTTAAATTCTTGAGTTTAAGGGACTGCACAAATCTTGTCAGTATGCCCAAAAGCATTAATTCCATGACTTCTCTTGTAGCTCTAGATTTATGCGGCTGCTTAAAACTAGAGAATCTTCCCTTGCTAGGAAACATGTCAATGTCTGAAGAAAGTATTGACGTCATATTTGCATCTGCAGAAAATTTTGATCTCTCTGATGGTAAACTCGTATCTTCTTACTATCTGAATTCTTTGATATTTTTGGACCTAAGCTTTTGCAATCTAAGTACAGTCCCTGATGCTATTGGAGAATTAAGGCATTTAGAAAGGCTGAATCTTGAAGGAAACAACTTTGTTTCCCTACCGCCTTCAACGGGGAGGCTTTCCAGTCTAGCATATTTAAACTTGGCACATTGCAGCAAGCTTCAATCTTTGCCGGAGCTCCGATTCTTTGCTACTTCTTCATCTGGGGGAAGGTATTTCAAAATGGTATCCGGATCTCATAATCGTAGGTCAGGATTATATATTTTCAACTGTCCTCTCTTGGAGATTGCAGAAGGTCAAAACTTGGCACTTTCGTGGCTGGTGAAGTTCATTAAGAATCCTTGTCATTTCCGGTGTGGCCTTGACATTGTTGTACCTGGGCACACAGTTCCACAGTGGTTTTGTCATCGATTTACAGAAAATTCAAGACTACGGATAACACACTATATGACTGATTTTGACAAATGGCTTGGCTTTGCCTTTTGTGTGGCCTTTGCAGAAAACTGTTGTCCAACAACTTCTGGTTATCCTCTTTATCTTTCTTTTGTAAGTGAACAAATGGAAGAAACCTTCGATATACCAATTCGGTCAGACCTGAACAATATTTATGGCTCAGATGCAGAACATTTATGGCTAATCTATATCTCTAGGCCCCACTGCCATTTTGTAACAACAGGAGCACAAATTACATTTAAAGCTCACCCAGGTTTGGTAATAAAACAATGGGGATTGCAGATGGTTATGAAGCATGACATCGATAACTATAGTTCATTTGATTTGTGGACAAATGGAGTTCATCAACAAGACTATCTTGGCCTAGATCATGTACATGAAAGCAGCAGCAAGCCTGAAATCCAGCTTTCTTATAATTGGTATGTAGCTGAGGAAGAGTTAAAGCCTAAAGTCCAGCTTCGTTATAACTGGCATGTTACCGAGGAAGAGGAAAAGGAGAATAGAGAAGCGAATGTGAAACTAAGTCATCTCTCGGATATAGGTCTTACCACATAG 3636 0.3839 MDSTTNISDTLRSLRSIVLQPFCALLDCLLFSNLRQGDIDFNSSMDYNNYQSYKYDVFISFRGPDTRNSFVDHLYDHLARKGIFTFKDDQRLEKGESLSPQLLQAIQNSRISIVVFSERYAESTWCLEEMAAIAECREEFKQTVFPVFYDVDPSHVRKQNGVYQNDFVLHKKKFKHDPDKVIRWVRAMADLAELVGWDVRNKPEFREIQIIVQEVIKTLGHKFSGFADDLIGIKPRVEAVKSLLKLSSEDDEFRVVGILGMAGIGKTTIASVLYDKISSQFDASCFIENVSKIYRDGDAIAVQKQILRQTVDEINLETYSPSEISGIVSKRMFNRKFLVVLDNVDIFEQVEELAINPRLLGPGSRMIITTRNAHILKVYEEQLSLSHDRCVSYEVPLLNSTEACKLFYRKAFKSKDLTSECVKLTTEVLKYAQGLPLAVRVVGSFLCTRNVNQWGDAMYRLRNNPDNKVMDVLKVSLEGLHSNDREIFLHIACFFKGEKEDYVKRILDACGLHPHFGIQNLIERSLITIRNQKIHMHEMLQELGKKIVRQQFLDEPGSWSRLWLYDDFYHVMMTETGTNKVKAIILDQEEHISEYPLLRAEGLSIMRGLKILILYHEKFSGSLNFLSNRLQYILWYGYPFASLPLNFEPFFLVELNMPCSSIQRLWDGQKYLPLLKRVDLSNSKYLVESPNFAGSPRLERLDFTGCINLLYVHPSIGLLEKLAFLSFEGCSSLVKLVLDGDTASNLYSLKVLHLSRCTNLETIPDFTGVSNLEYLDIDQCASLSMIGHSIGDLTQLKFLSLRDCTNLVSMPKSINSMTSLVALDLCGCLKLENLPLLGNMSMSEESIDVIFASAENFDLSDGKLVSSYYLNSLIFLDLSFCNLSTVPDAIGELRHLERLNLEGNNFVSLPPSTGRLSSLAYLNLAHCSKLQSLPELRFFATSSSGGRYFKMVSGSHNRRSGLYIFNCPLLEIAEGQNLALSWLVKFIKNPCHFRCGLDIVVPGHTVPQWFCHRFTENSRLRITHYMTDFDKWLGFAFCVAFAENCCPTTSGYPLYLSFVSEQMEETFDIPIRSDLNNIYGSDAEHLWLIYISRPHCHFVTTGAQITFKAHPGLVIKQWGLQMVMKHDIDNYSSFDLWTNGVHQQDYLGLDHVHESSSKPEIQLSYNWYVAEEELKPKVQLRYNWHVTEEEEKENREANVKLSHLSDIGLTT 1211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03612 1211 Gene3D - 51 225 IPR035897 -
Trre11g03612 1211 FunFam Disease resistance protein (TIR-NBS-LRR class) 51 221 - -
Trre11g03612 1211 Pfam NB-ARC domain 238 465 IPR002182 GO:0043531
Trre11g03612 1211 PRINTS Disease resistance protein signature 744 760 - -
Trre11g03612 1211 PRINTS Disease resistance protein signature 255 270 - -
Trre11g03612 1211 PRINTS Disease resistance protein signature 331 345 - -
Trre11g03612 1211 PRINTS Disease resistance protein signature 432 446 - -
Trre11g03612 1211 SUPERFAMILY L domain-like 603 978 - -
Trre11g03612 1211 Gene3D Ribonuclease Inhibitor 560 741 IPR032675 -
Trre11g03612 1211 SMART till_3 54 194 IPR000157 GO:0007165
Trre11g03612 1211 Gene3D - 227 385 IPR027417 -
Trre11g03612 1211 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 55 736 IPR044974 GO:0006952
Trre11g03612 1211 SMART LRR_typ_2 870 891 IPR003591 -
Trre11g03612 1211 SMART LRR_typ_2 893 916 IPR003591 -
Trre11g03612 1211 SMART LRR_typ_2 746 770 IPR003591 -
Trre11g03612 1211 Pfam Leucine Rich Repeat 651 669 IPR011713 -
Trre11g03612 1211 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 227 491 IPR027417 -
Trre11g03612 1211 SUPERFAMILY "Winged helix" DNA-binding domain 467 571 IPR036390 -
Trre11g03612 1211 Gene3D - 397 481 IPR042197 -
Trre11g03612 1211 Pfam C-JID domain 1001 1128 IPR045344 -
Trre11g03612 1211 ProSiteProfiles TIR domain profile. 53 219 IPR000157 GO:0007165
Trre11g03612 1211 SUPERFAMILY Toll/Interleukin receptor TIR domain 48 197 IPR035897 -
Trre11g03612 1211 Gene3D Ribonuclease Inhibitor 742 844 IPR032675 -
Trre11g03612 1211 Gene3D Ribonuclease Inhibitor 845 985 IPR032675 -
Trre11g03612 1211 Pfam TIR domain 54 219 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03612 Trre-Chr11 49358749 49363599 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03612 742 922 WRKY Transcription Factor Family AT4G12020 32.487 7.34e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03612 - - psat:127091204 1730.69