Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03609 ATGGCTTCTACTAGTAACAACTCTTCCTCTCACCGAGTCTGTAAATACGACGTGTTTCTCAGTTTTCGAGGCACCGACACACGCAACAATTTCATCGATCATCTCTACAATCACCTCATCAAAAAAGGCATATTCGTTTTCAAAGACGATCAAACTCTTCAAAAAGGAGAATTCATTTCATCGCAGCTTCTACAAGCAATTCGAGATTCTAGGGTTTCTATAATTGTTTTCTCACAAAATTATCCTCAATCAACATGGTGTTTGGATGAAATGGTTGCTATCTCCGATTGCCGCAGAGAATTGAATCGCACTGTCATTCCAGTTTTCTATGATGTTGATCCATCTCATGTTCGAAAGCAGATTGGGATTTTCAAAGATGATTGCAACTCACAGACTAAGAAGTTCAAACATGACGTAGATAAGGTTAATCGATGGCAGGAAGCTATGACTGAATTGGGAAATTTAGTTGGATTTGATCTAAGAGACAAGCCAGAGTTTACAGAGATTGGAAAAATTGTTCAAGCAGTGATAAAAACATTGGGTCATAAATTCTCAGGGTTTGCCGATGATCTCGTTGGAATGCAACCTCACATAGAAGAATTAGAAAAACTTCTAAAATTGACCTCAGAGGATGACGACGTTCGAGTTCTGGGAATTTGGGGGATGGGTGGAGTAGGAAAGACAACACATGCTACTGTTTTGTATGACAGAATCTCTTATCAGTTTGATGCGCGTTGTTTTATTAATTACACAAGCAAAATTTATATGGATGGTGGCGCTGTTGCTGTACAAAAACAAATCCTTCGTCAAGCTCTAGATGAAAGAAATCTAGATTCATATGATACTTGTGAAATAGCCGGGATTATGATAAATAGGCTTCAAAGCGGCATTAAGGTCCTTCTAGTTCTTGATAATATTGATCAATTAGAGCAATTGCAGGAATTGCCCATAAATCCTAGATTGCTCTGTCGAGGTAGTAGAATAATCATAACCACAAGGGATGAGCATATTCTAAAAGTATATGGGGTAGATACAGTACATGAAGTTCCAATGTTAAATAGTAAAGATGCCTGTGAACTTTTTTGTAGAAAAGCCTTCAAAGGTGAAGAGCGAAGCAGGAATTGTGTTGAATTGATTCCAGAGGTACTAAAATATGCTCAACATCTTCCATTGGCAATTAGAGTAGTGGGTTCTTTCTTGTGTACCCGAGATGCTACTCAGTGGAGAGATGCTTTGGATAGATTGAGGAATAATCCAGACAGTAAAATTATGGATGTGCTTCAGATGAGTGTTGATGGACTACAACATGAGGAGAAGGAAATATTTCTGCACATTGCTTGTTTCTTTAAAGGGGAGAGAGAAGATTATGTAAAGCGAATTCTGGATGCTTGTGGATTATACCCTCACATTGGAATTCAAAGAATCCTTGAGAAATCACTCATTACCATTAAAAACCAGGAGATTCATATGCATGATATGTTACAAGAACTGGGGAAGAAAATTGTTCGGCACGGATTTCCCGAAGAGCCTGGATTGTGGAGTAGACTATGGCGATACAATGATTTCCATCATGTCTTGATGACAGAAACGGGTGCAAGCAATGTTAAAGCCATAGTTCTGGATCAAAAGGAAAATTTCTCCAAATGCATGGCTGAAGGATTTTCAAATATGAGGAATCTTGGACTTCTCATATTGTATCATAACAATTTTTCAGGAGATCTCAATTTTCTTTCGGACAATCTGCGATATCTTTTGTGGCATGGATACCCTTTTACTTCTTTGCCGTCAAATTTTGAACCATATTATCTTGTGGAATTGAATATGCCTAACTGTAGCATTCAACGACTGTGGGAAGGTCGCAAGGATCTTCCTTATTTGAGAAGTATGGATGTGAGCAACTCCAAGTATCTTATAGAGACTCCTAAGTATTTTTGGACCCCAAAACTTGAGCGGCTAGATTTCACTGGATGCACAAACTTATCACAGGTCCATCCATCAATTGGACATCTTACAGAACTTGTCTTCTTAAGTTTGCAAAACTGCAGCAGTTTGGTCAACCTCGATTTTGGTAGTGTATCAAATTTAAATTCTTTGCGAGTTCTACGCCTCTCTGGTTGCACAAAACTTCAAAAGACGCCAGAATTTACAGGGGCATCAAATCTTGAGTACCTTGATATGGATGGATGCATATGTTTATCCACAGTCCATGAATCCATTGGGGTTCTTGCAAAGCTTAGATTCTTGAGTTTAAGGGATTGCATAGTTCTTGCTGGAATGCCCAATAGCATTAATACCATGACTTCTCTTGTAACTTTAGATTTATACGGCTGCTTGAAACTTACAACTCTTCCCCTTGGACAAAAATTCAGTCCTCCGTATATGGAATCTTTGATTTTTCTTGATGCAAGCTTTTGCAATCTTCATAGATTACCTGATGTTATTGGAGGTTATTTTAAAATAGCATCGGGATCACGTGATCATAGGTCAGGATTACATGTATTTGACTGCCCGAAATTGAAGTTCACGCTATTGGATAACCATGAATATTTTAGTGACCTTCTCTGTAAATGGTTAGAAAGACTTCTTAAGGAACCCCGCCACTTTCGGTGTGGCTTTGACATTATTGTTCCTTGGAATTGGGAAAATATTGATCAACCATTAACTTATCTTATTCCAGAGTGGTTCCATTACCAATTTAGTGGGCGTTCAGTTATAAGGATAGTAAAGTCTAATGTTGATGACAACTGGGTTGGATTTTCCTTTTGTGTAGTATTTGAGGTAAACAACCGTCCTGCAAATTCGGATTCATCACATGGTTCATCGTCTTCTGCACTGCCACATCCTTTTTATCTTTCTTTTGAAAGTGAATACACAGAAGAACGCTTCGATATGCCACTCAGTTTGGAACTGGTCAAAATTGATGGATCAAAACATCTGTGGATAATTTATATCTCCCGAGAGCATTGCCACTTTGTGAAAACTGGAGCACATATCACATTTAAAGCCTGCCCAGGTTTGGTGATAGAGAAATGGGGAATGCGCATGTTAATCAAGAAGGCGGGTGCAGAAAAATTATCTTCTTATGGAAATAGCCGTATGTTCTTGGGTAATGAATTTGAAGAATATGATGCGCACCATCTTAGGTTTGATCATGTGGAAGAAAGTATCAGCAGTTCCGGACCTAAAATTCAGCTTCCCTATAATTGGTTGGTTACCGAGGAAGATGAAGTTGAGAGTTCTCAAGCCAAGTCAAAAGAAATTCGTCTTTCTAATCTAGGCCTTTAA 3285 0.3851 MASTSNNSSSHRVCKYDVFLSFRGTDTRNNFIDHLYNHLIKKGIFVFKDDQTLQKGEFISSQLLQAIRDSRVSIIVFSQNYPQSTWCLDEMVAISDCRRELNRTVIPVFYDVDPSHVRKQIGIFKDDCNSQTKKFKHDVDKVNRWQEAMTELGNLVGFDLRDKPEFTEIGKIVQAVIKTLGHKFSGFADDLVGMQPHIEELEKLLKLTSEDDDVRVLGIWGMGGVGKTTHATVLYDRISYQFDARCFINYTSKIYMDGGAVAVQKQILRQALDERNLDSYDTCEIAGIMINRLQSGIKVLLVLDNIDQLEQLQELPINPRLLCRGSRIIITTRDEHILKVYGVDTVHEVPMLNSKDACELFCRKAFKGEERSRNCVELIPEVLKYAQHLPLAIRVVGSFLCTRDATQWRDALDRLRNNPDSKIMDVLQMSVDGLQHEEKEIFLHIACFFKGEREDYVKRILDACGLYPHIGIQRILEKSLITIKNQEIHMHDMLQELGKKIVRHGFPEEPGLWSRLWRYNDFHHVLMTETGASNVKAIVLDQKENFSKCMAEGFSNMRNLGLLILYHNNFSGDLNFLSDNLRYLLWHGYPFTSLPSNFEPYYLVELNMPNCSIQRLWEGRKDLPYLRSMDVSNSKYLIETPKYFWTPKLERLDFTGCTNLSQVHPSIGHLTELVFLSLQNCSSLVNLDFGSVSNLNSLRVLRLSGCTKLQKTPEFTGASNLEYLDMDGCICLSTVHESIGVLAKLRFLSLRDCIVLAGMPNSINTMTSLVTLDLYGCLKLTTLPLGQKFSPPYMESLIFLDASFCNLHRLPDVIGGYFKIASGSRDHRSGLHVFDCPKLKFTLLDNHEYFSDLLCKWLERLLKEPRHFRCGFDIIVPWNWENIDQPLTYLIPEWFHYQFSGRSVIRIVKSNVDDNWVGFSFCVVFEVNNRPANSDSSHGSSSSALPHPFYLSFESEYTEERFDMPLSLELVKIDGSKHLWIIYISREHCHFVKTGAHITFKACPGLVIEKWGMRMLIKKAGAEKLSSYGNSRMFLGNEFEEYDAHHLRFDHVEESISSSGPKIQLPYNWLVTEEDEVESSQAKSKEIRLSNLGL 1094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03609 1094 Pfam C-JID domain 891 1018 IPR045344 -
Trre11g03609 1094 PRINTS Disease resistance protein signature 693 709 - -
Trre11g03609 1094 PRINTS Disease resistance protein signature 216 231 - -
Trre11g03609 1094 PRINTS Disease resistance protein signature 293 307 - -
Trre11g03609 1094 PRINTS Disease resistance protein signature 386 400 - -
Trre11g03609 1094 Gene3D - 13 186 IPR035897 -
Trre11g03609 1094 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 713 IPR044974 GO:0006952
Trre11g03609 1094 Gene3D Ribonuclease Inhibitor 530 711 IPR032675 -
Trre11g03609 1094 SUPERFAMILY L domain-like 508 852 - -
Trre11g03609 1094 ProSiteProfiles TIR domain profile. 14 180 IPR000157 GO:0007165
Trre11g03609 1094 FunFam Disease resistance protein (TIR-NBS-LRR class) 12 182 - -
Trre11g03609 1094 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 158 IPR035897 -
Trre11g03609 1094 Gene3D - 351 435 IPR042197 -
Trre11g03609 1094 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 445 IPR027417 -
Trre11g03609 1094 SMART till_3 15 155 IPR000157 GO:0007165
Trre11g03609 1094 Gene3D - 187 345 IPR027417 -
Trre11g03609 1094 Pfam TIR domain 15 182 IPR000157 GO:0007165
Trre11g03609 1094 Gene3D Ribonuclease Inhibitor 712 870 IPR032675 -
Trre11g03609 1094 Pfam NB-ARC domain 201 420 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03609 Trre-Chr11 49336417 49344398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03609 16 814 WRKY Transcription Factor Family AT4G12020 30.854 3.37e-89 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03609 - - var:108332841 1268.45