Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03601 ATGGCTTCACTCAACATGCAACGTGCGAGTGACCTTCTTCTTGGAGTCTCAATATTTGGTGAGCCGATCAAAACTAAAATCATTGATCGTGCACATTCAGCTATGGAAGAATTGTGGAGGTTAGGATTTGCTCCTGGGGAACCTTTATGGCATCCACATAAAGAAGATAGATACAAAATTCTTAATTATACCGAATATTTGAAAGCTTTTGGTCGGGTTGATTCAACGTTAATGGAGATTGTTAGATTGGCTGAGGTTGGAGAGCTGCAAGCTTTACCTAGCTTTGATTCGTGCCGAAATATGAATCCAATGTTGACAAATCAAAATTCCGGACAAGGTTTGCAGATTGAAGCTTCGCGCGATATGACACTGTTTAACATGAATCCAATTAATATTGTTGAAATACTTATGGATGTGAATCAATGGTCGAAGGCATTTCACAACATTGTCTCAAGAGCAACGGTTCTAGGAAGCTTTTCAGATGGTGTTGAAGGAACCTATGATGGAAAATTGCATGTGATGAGTGCAGAATTTCATTTACCTAGTCCTGTTATACCTACTAGGGAGTGTTCTTTTGCAAGGTACTGCAAGAAATTCCCTTATGACACATGGGTTGTTGTTGATGTATCTTTGGAAGACTTTTTTCCTTCTCCAACAAACAATCTTCGAAAAAGACCTTCAGGCTGTTTGATCATACCAAAGGAAAAAGCACCCACCCAGGTTATATGGGTGGAGCATGTGGAAGCAGATCATAGTCAATTGAATAATCTTTTCAAGCCATTAGTTACCTCTGGATTGGCTTTTGGTGCAACACGTTGGATCGCTTCTATGATCCGGCACTTTGAGACGTCAGTATCACTGAAGGCTACAATGCTTGCTGCAGATGCTGGAGTTCTTATACCTCAAACTGGGAGGACAAGTTTCTTGAAGTTGGCAGATAGAATGAAGAGAAAATTTTGTGCAAATCTTAGTGCTACAACTAGCAATCCATGGATGAGATTGGCTCCTTCTCCTAATTCAATAGATGTTAGAGTTATGATTGATAATAATATGAATGGTGCTACAAATAATCCTCTTGGAACATCAGTGGTTTTTAGTACTACTATCTGGTTTAATGTCTCTCCAAATCGATTATTCAACTTCCTTCGTCACGAGAAATCCAGAAACGAGTGGGATATACTTTCAAAAACACTTTTTATTCGAGAATTTGCCAGCATGGTGACCGGCCAACATCCAGAGAATCGTGTTTCTTTGCTGCGAGCAAGTAATTCTAAGGACAAGACAGAAATCTTTTACCTACAAGAGAGTTATGCAACCTCATCAGCTTCCTACGTGATTTATGCGCCACTAGAGGAATCGGCATTGGCATATCTTGCAAAAGGATCCAACCAAGAAAATGTAATTGCATATCCATCAGGGTTTGCTATAATTCCAGGAGGGTTACACAGAAATGGTGATCCAAGCAATGGCAATGAAAGTCTTCTAACTATTTCATTTCATCTACTTGATAAAGCCATCACCAATGTTGCAGTTATTCCACCTGAATCAGTTCAAACAATTTATGGGATCATTACAGAAACTGTTACTGCTATAAAGGATGCATTGTTGTATCATAGTCGACACAACAATTGGGCGCAAGATGAATTGAAAAATGGCTTGACAACCAAAAATTTTAGTGTGTAG 1683 0.3922 MASLNMQRASDLLLGVSIFGEPIKTKIIDRAHSAMEELWRLGFAPGEPLWHPHKEDRYKILNYTEYLKAFGRVDSTLMEIVRLAEVGELQALPSFDSCRNMNPMLTNQNSGQGLQIEASRDMTLFNMNPINIVEILMDVNQWSKAFHNIVSRATVLGSFSDGVEGTYDGKLHVMSAEFHLPSPVIPTRECSFARYCKKFPYDTWVVVDVSLEDFFPSPTNNLRKRPSGCLIIPKEKAPTQVIWVEHVEADHSQLNNLFKPLVTSGLAFGATRWIASMIRHFETSVSLKATMLAADAGVLIPQTGRTSFLKLADRMKRKFCANLSATTSNPWMRLAPSPNSIDVRVMIDNNMNGATNNPLGTSVVFSTTIWFNVSPNRLFNFLRHEKSRNEWDILSKTLFIREFASMVTGQHPENRVSLLRASNSKDKTEIFYLQESYATSSASYVIYAPLEESALAYLAKGSNQENVIAYPSGFAIIPGGLHRNGDPSNGNESLLTISFHLLDKAITNVAVIPPESVQTIYGIITETVTAIKDALLYHSRHNNWAQDELKNGLTTKNFSV 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03601 560 SUPERFAMILY Bet v1-like 24 282 - -
Trre11g03601 560 ProSiteProfiles START domain profile. 47 286 IPR002913 GO:0008289
Trre11g03601 560 Pfam START domain 107 280 IPR002913 GO:0008289
Trre11g03601 560 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 24 535 IPR042160 -
Trre11g03601 560 SMART START_1 78 283 IPR002913 GO:0008289
Trre11g03601 560 SUPERFAMILY Bet v1-like 304 479 - -
Trre11g03601 560 CDD START_ArGLABRA2_like 24 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03601 Trre-Chr11 49283463 49288292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03601 6 535 Homeobox Transcription Factor Family AT4G04890 40.441 5.81e-117 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03601 K09338 - jre:108992281 475.322