Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03593 ATGTCTGAATTAGACGCACAAATTCCTACTACCTTCGATCCTTTTGCTGAGGCAAATGCTGAGGACTCTGGTGCTGGATCATCAAAGGAGTACGTCCATATTCGTATACAGCAGCGAAATGGTAGGAAAAGCTTGACAACTGTCCAGGGATTGAAGAAAGAATTCAGTTACAACAAGATTCTTAAAGACCTTAAGAAGGAGTTTTGTTGTAATGGTACAGTTGTCCAGGACCCAGAGCAAGGACAGGTTATTCAACTTCAAGGCGATCAGAGGAAGAATGTATCTACCTTCCTAGTCCAGGCTGGAATTGTGAAGAAGGAGCATATTAAAATTCATGGTTTCTGA 345 0.4174 MSELDAQIPTTFDPFAEANAEDSGAGSSKEYVHIRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPEQGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKIHGF 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03593 114 NCBIfam translation initiation factor SUI1 6 114 IPR005874 GO:0003743
Trre11g03593 114 CDD eIF1_SUI1 30 113 IPR005874 GO:0003743
Trre11g03593 114 FunFam Eukaryotic translation initiation factor SUI1 2 114 - -
Trre11g03593 114 PIRSF Transl_init_SUI1_Euk 1 114 IPR005874 GO:0003743
Trre11g03593 114 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 8 114 - -
Trre11g03593 114 MobiDBLite consensus disorder prediction 1 29 - -
Trre11g03593 114 ProSiteProfiles Translation initiation factor SUI1 family profile. 32 102 IPR001950 GO:0003743|GO:0006413
Trre11g03593 114 Pfam Translation initiation factor SUI1 29 103 IPR001950 GO:0003743|GO:0006413
Trre11g03593 114 SUPERFAMILY eIF1-like 4 114 IPR036877 GO:0003743|GO:0006413
Trre11g03593 114 Gene3D - 1 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03593 Trre-Chr11 49207573 49208868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03593 1 114 Eukaryotic Initiation Factors Gene Family AT4G27130 87.719 1.34e-72 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03593 K03113 - csin:114321350 224.557