Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03569 ATGGTTTCCCCGGAAAACACCAATTGGCTTTTCGATTACACTTTGATTGACGAAATTCCCGTCTCCGATGATGGTTCCTTCGCCTTCACGTGGCCCCCACCACATCCTTCCAATGTTGGTGTTGAAATGGATGGCGGCTCTTTGGGGGATTCTGATGGTATCAAAGATCCTGGTTCGAAGAAGAGGGGTAGATCGGATTCGTGTGCTCCTTCCAGCTCTAAGGCATGTCGAGAGAAGCTGCGAAGGGATAGGCTGAACGACAAGTTTGTTGAATTAGGCTCCTTCTTGGAGCCTGGAAGGCCTCCCAAAACAGACAAGGCAGCAATTCTGATTGATGCTGCCCGCATGGTGACACAGTTGCGGGGTGAAGCCGAGAAGTTGAAAAACTCAAATTCAAATCTTCAAGAGAAGATTAAAGAGTTGAAGGTTGAGAAAACTGAACTCCGTGATGAAAAGCAGAGGCTTAAGGCTGAGAAAGAGAAGTTGGAGCAGCAAATGAAATCAATGAATGCCCAACCCAGTTTCTTGACACACCCTCCTGCAATCCCTGCTGCATTTGCTCCACAAGGCCAAGTTCCTGGCAACAAGTTAATGCCTTTCATGAGTTATCCAGGAGTTGCCATGTGGCAATTCATGCCACCAGCCTCCGTGGATACCTCACAGGATCATGTACTCCGTCCACCAGTCGCCTAA 693 0.4848 MVSPENTNWLFDYTLIDEIPVSDDGSFAFTWPPPHPSNVGVEMDGGSLGDSDGIKDPGSKKRGRSDSCAPSSSKACREKLRRDRLNDKFVELGSFLEPGRPPKTDKAAILIDAARMVTQLRGEAEKLKNSNSNLQEKIKELKVEKTELRDEKQRLKAEKEKLEQQMKSMNAQPSFLTHPPAIPAAFAPQGQVPGNKLMPFMSYPGVAMWQFMPPASVDTSQDHVLRPPVA 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03569 230 MobiDBLite consensus disorder prediction 29 77 - -
Trre11g03569 230 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 74 144 IPR036638 GO:0046983
Trre11g03569 230 FunFam Transcription factor bHLH34 60 118 - -
Trre11g03569 230 Gene3D - 72 149 IPR036638 GO:0046983
Trre11g03569 230 SMART finulus 75 126 IPR011598 GO:0046983
Trre11g03569 230 Coils Coil 117 172 - -
Trre11g03569 230 CDD bHLH_AtILR3_like 74 149 - -
Trre11g03569 230 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 120 IPR011598 GO:0046983
Trre11g03569 230 Pfam Helix-loop-helix DNA-binding domain 73 120 IPR011598 GO:0046983
Trre11g03569 230 PANTHER BHLH TRANSCRIPTION FACTOR 4 230 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03569 Trre-Chr11 48913374 48915366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03569 1 230 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 69.710 4.24e-111 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre11g03569 HLH 9.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03569 - - ccaj:109815088 382.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03569 11 48913374 48915366 Trre11g03569 11 48913374 48915366 ECH
Trre11g03569 11 48913374 48915366 Trre7g02187 7 17381789 17384761 PCT