Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03562 ATGGTAATAATTCAACAATATATGGATGTTATAAAGTCTACATTTTGCCTAGTTTTGGTTCTTAATATTGTAGGAGTTATCAGCATTGAAGAAAAGAAGGAAACAACAGATGAAGAATTCATTAGCAAATTATTTGATCCTGCATCTGGATTATTGGATGAGGATACGGCAGAGATACTATGGATACTTTGTATGGAAGATATGATTGATGTAAGGAAAGATATTGGAGATCCTGCCTTATCACATAGTAGCAACAATGAAATTAGCACAGAAATTGGATCAATATCAAGAGAAAACATACAAAAATTGATTAGTACTTGCAATCCACAGTTGAAGGAAAACTTTCTTAACTGTTTGAGAAAAAACAATAAAGATGGTTACGAGGGATCAGGTTTATCTAGAAGATATCTACGTCGAGTTTCGCCTCGACACTTGGGAGAAAAGAAAGATAAAGATAATGACAATGATGGATCATCTAAAAAATCTAAAAGTGATTCTGATTCTGATAAATCGTCTAAAGATGATAGTGATTCTGATAAAAAGTCGAAGAAGTCGTCTGAGTCTAAACACAAGAAAGCAATTATTGATGCCATGGTTATATCTGCATTGGTGACATTTACATTTGCAGCATGTCTCTTTTTATGTTGTTGTAAGTGTTGTGGAAGTGGTAGAGACAGACAGACAGATGAAAGGCCACTACTCAGTATGAGCATGAGTGATTATTCTGTTGGTTCTTCTTCAAATAATAATCACTCAAAAATTTCACTAAACGAGGAGAAACATGGAGTACAATCAATAAGTAATACTCTTCATGATGACAAAAAGAACTCGATGAAAGAAGATGCTGCAAGACCATCATTTGACCTTAAACCTCCACCTGGTAGGGTAGGATCTGGTATTCCACCTTTGAAACCCCCTCCTGGAAGACCTGATCCTCTTCCACCGGAACCAGCACCAGTTCCGGCTATTGATTATGCCAAAAATCCCCCGCTGCCTCCTCCTCCTCCTGGACTATCAACGCCTAGCAGTGGTGGCCCTCCTCCAGGACTACCGAAGCCTAATAGTGCCGGCCCTCCTCCACCGCCACCACCTGGAAATGGTCCTAAGCCTCCCCCACCGCCACCACCTCGTGGGAAACCAGGCGGTCCTCGTCCACCACCGCCTCCTAAGGGTGGTGGTCCTCCAAGAGCTCCTCCACCATTTGGCAAAAAGAGTCCTAGACCTTTAGCTGGTGGAGCAAAAGTTCAAGGAAAAGTTGAAGATGCTTCAGAAGGTGAAGGTGATGCTCCTAAAACTAAGTTAAAGCCCTTTTTTTGGGACAAGGTTCAAGCAGACTCAGATCAAACTATGGTTTGGAATCAACTCAAAGCAGGATCATTCCAGTTTAATGAAGAAATGATGGAAACACTTTTTGGATACACTAATCCATCAATGGAAAAAGGCAAAGGTGGAATGAAGAAAGACGCTGCCGCTCGTGCTTCTTCCCCTCAGTATATCACTGTTATTGACTCAAAGAAAGCACAAAACTTATCAATTTTGTTAAAAGCATTAAATGTGACATTAGAAGAAGTTCGAGATGCGCTACTTGAAGGAAATGAGCTCCCAACGGAATTCCTTCAAACACTGATGAAGATGGCTCCAACCTCGGAGGAAGAGCTTAAGCTTAGACTATTCAGTGGTAATATTTCTCAACTTGGTCCTGCTGATCGGTTCCTGAAATCCCTGGTTGAGATTCCATTTGCCTTTAAACGAATGGACGCATTGCTTTACATGAGTACTCTTCAGGAGGAACTCAACTCTACCCGAGATTCTTTTGCTACTTTAGAGGTTGCTTGTAAGGAACTAAGAAGCAGTAGACTGTTCCTCAAGCTTCTAGAAGCAGTTCTAAAAACAGGAAACCGAATGAACGACGGAACATTCCGTGGAGGCGCACTTGCATTCAAACTTGATACACTACTAAAATTGTCTGATGTAAAAGGAGTAGATGGAAAAATCACACTCTTACACTTTGTTGTTCAAGAGATAATCCGAACCGAAGGAATAAGAGCAGCTCGAAATATGAGAGAGAGTGCTAGTTTCTCTAGTATAAAAACCGATGACCTTCTCGAAGACATTAGTCAAGAATCAGAAGACCACTACCGCGAAATAGGTCTTCAAGTTGTTTCGCGTTTGAGTAGTGAGCTCGAGAATGTGAAAAAAGCAGCAGCATTAGACGCTGATGGTTTAACAGGAACAACAGCTAAATTAGGCCATGGTCTACTAAAAACAAGAGATTTCGTAAAGAAAGAGATGGCGGAAAATTTAGATAATGACAAAGGGTTTTATGAAACAGTTAAGAATTTTGTGGAGAAAGCCGAGGTTGATGTCACAAGTTTGTTAGAGGAAGAAAAGAAAATCATGGCTCTTGTGAAAAGTACTGGTGATTACTTTCATGGGAGTACAGGGAGAGATGAAGGGTTGAGATTGTTTGTAATCGTACGCGATTTCTTAATAATGTTGGATAAAGTTTGCAAAGAGATTCAAAAAGCACCAAAGAAGCCGATAACAAAGAATGTGAAACACGAAAGTGAAACAAAGAATGTGAAACAAGAAACTGAAAAAAAGAATGTAAAACAAGAAAGTGAAACAAAGAATGTGAAACAAGATACTGCTGGATCTAGAGGGCCATCAACCTCGAAAACTCGTCCACCACCACCTGATTTTCGGCAGAAATTGTTTCCGGCAGTGGTAGATAGAAGAGTGGATGATTTTAGTTCAGATGAAGACAGTCCATAG 2775 0.4018 MVIIQQYMDVIKSTFCLVLVLNIVGVISIEEKKETTDEEFISKLFDPASGLLDEDTAEILWILCMEDMIDVRKDIGDPALSHSSNNEISTEIGSISRENIQKLISTCNPQLKENFLNCLRKNNKDGYEGSGLSRRYLRRVSPRHLGEKKDKDNDNDGSSKKSKSDSDSDKSSKDDSDSDKKSKKSSESKHKKAIIDAMVISALVTFTFAACLFLCCCKCCGSGRDRQTDERPLLSMSMSDYSVGSSSNNNHSKISLNEEKHGVQSISNTLHDDKKNSMKEDAARPSFDLKPPPGRVGSGIPPLKPPPGRPDPLPPEPAPVPAIDYAKNPPLPPPPPGLSTPSSGGPPPGLPKPNSAGPPPPPPPGNGPKPPPPPPPRGKPGGPRPPPPPKGGGPPRAPPPFGKKSPRPLAGGAKVQGKVEDASEGEGDAPKTKLKPFFWDKVQADSDQTMVWNQLKAGSFQFNEEMMETLFGYTNPSMEKGKGGMKKDAAARASSPQYITVIDSKKAQNLSILLKALNVTLEEVRDALLEGNELPTEFLQTLMKMAPTSEEELKLRLFSGNISQLGPADRFLKSLVEIPFAFKRMDALLYMSTLQEELNSTRDSFATLEVACKELRSSRLFLKLLEAVLKTGNRMNDGTFRGGALAFKLDTLLKLSDVKGVDGKITLLHFVVQEIIRTEGIRAARNMRESASFSSIKTDDLLEDISQESEDHYREIGLQVVSRLSSELENVKKAAALDADGLTGTTAKLGHGLLKTRDFVKKEMAENLDNDKGFYETVKNFVEKAEVDVTSLLEEEKKIMALVKSTGDYFHGSTGRDEGLRLFVIVRDFLIMLDKVCKEIQKAPKKPITKNVKHESETKNVKQETEKKNVKQESETKNVKQDTAGSRGPSTSKTRPPPPDFRQKLFPAVVDRRVDDFSSDEDSP 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03562 924 MobiDBLite consensus disorder prediction 238 264 - -
Trre11g03562 924 MobiDBLite consensus disorder prediction 846 924 - -
Trre11g03562 924 MobiDBLite consensus disorder prediction 295 405 - -
Trre11g03562 924 MobiDBLite consensus disorder prediction 846 880 - -
Trre11g03562 924 Coils Coil 507 527 - -
Trre11g03562 924 PANTHER FORMIN-RELATED 135 875 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Trre11g03562 924 MobiDBLite consensus disorder prediction 265 286 - -
Trre11g03562 924 MobiDBLite consensus disorder prediction 238 432 - -
Trre11g03562 924 Gene3D Formin, FH2 domain 429 878 IPR042201 -
Trre11g03562 924 ProSiteProfiles Formin homology-2 (FH2) domain profile. 424 859 IPR015425 -
Trre11g03562 924 MobiDBLite consensus disorder prediction 142 191 - -
Trre11g03562 924 SUPERFAMILY Formin homology 2 domain (FH2 domain) 496 846 - -
Trre11g03562 924 SMART it6_source 424 848 IPR015425 -
Trre11g03562 924 Coils Coil 853 882 - -
Trre11g03562 924 Pfam Formin Homology 2 Domain 428 833 IPR015425 -
Trre11g03562 924 MobiDBLite consensus disorder prediction 143 191 - -
Trre11g03562 924 MobiDBLite consensus disorder prediction 906 924 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03562 Trre-Chr11 48833968 48839127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03562 401 915 FH2 protein (formin) Gene Family AT5G54650 60.078 0.0 590
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03562 - - gmx:100792872 728.013