Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03555 ATGAAAGAGGAATCTACAGGATTAATAATTGGAATTTCTATTGGTGTTGTTATTGGAGTTGTTTTAGCAATTTCTGCATTTATCTGTTTTAGATATCATAGGAAGAGATCACAGATAGGGAATAGTAGTTCTCGAAGGGCGGCTACAATACCGATTCGCGCAAATGGTGCTGATTCTTGTACTATTTTATCAGATTCAACTTTAGGTCCTGAATCACCTGTAAGGTCTGGTAGTAGAAATGGCATGAACTTCTGGATTGATGGTTTCAAGAAAAGTAACATGGTTTCTGCATCTGGAATACTTGAATATTCATACAAGGACTTGCAAAAGGCAACATATAATTTCACAACATTGATAGGACAAGGTGCATTTGGTCCTGTATATAAAGCTCAAATGTCTACTGGTGAGACTGTTGCAGTTAAAGTTCTTGCAACCAATTCTAAACAAGGGGAGAAAGAATTTCACACTGAGGTTATGTTGTTGGGAAGGTTACACCATAGAAACTTGGTCAATTTGGTTGGATATTGTGCAGAAAAGGGTCAGCATATGCTTGTATATGTCTACATGAGCAAAGGCAACTTGGCTTCCCACTTGTACAGTGAAGAGAATGGGAATCTGGGATGGGATTTGAGGGTTCATATAGCTTTAGACGTAGCAAGAGGCTTGGAGTATCTTCATGATGGGGCAGTTCCTCCTGTCATTCATCGCGACATCAAATCTAACAATATTCTCTTGGATCAGTCCATGCGAGCGCGGGTTGCTGATTTTGGACTTTCAAGAGAAGAGATGGTGGATAAACATGCAGCTGTTCGCGGTACCTTTGGCTATCTCGATCCCGAGTATATATCTTCAGGAACATTCACAAAGAAAAGTGACGTATACAGTTTCGGAGTGTTGCTCTTTGAACTTATAGCTGGCCGAAATCCTCAGCAGGGCCTTATGGAATATGTTGAACTTGCAGCAATGAACACTGAGGGAAAAGTTGGTTGGGAGGAGATAGTTGATTCAAAACTTGAAGGAAAATGTGATTTCCAAGAACTGAATGAAGTAGCAGCACTTGCCTACAAATGCATCAACCGCGCCCCACGGAAGCGTCCTTCGATGAGGGACATAGTTCAAGTACTAACTCGGATACTTAAAGAAAGACACCAAAGGAATCATCACAAGAAGTCGCTTTCAGCGACAACTGATGATGTTGCAATAGATGTTGATGAGCCTGAAAATAAGGATCATGTTACTGACCATAGAAGAGATGAATCTATAGATAGTGCAAATGACATGTATGATTTGTAA 1293 0.4037 MKEESTGLIIGISIGVVIGVVLAISAFICFRYHRKRSQIGNSSSRRAATIPIRANGADSCTILSDSTLGPESPVRSGSRNGMNFWIDGFKKSNMVSASGILEYSYKDLQKATYNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATNSKQGEKEFHTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVYMSKGNLASHLYSEENGNLGWDLRVHIALDVARGLEYLHDGAVPPVIHRDIKSNNILLDQSMRARVADFGLSREEMVDKHAAVRGTFGYLDPEYISSGTFTKKSDVYSFGVLLFELIAGRNPQQGLMEYVELAAMNTEGKVGWEEIVDSKLEGKCDFQELNEVAALAYKCINRAPRKRPSMRDIVQVLTRILKERHQRNHHKKSLSATTDDVAIDVDEPENKDHVTDHRRDESIDSANDMYDL 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03555 430 Gene3D Transferase(Phosphotransferase) domain 1 189 403 - -
Trre11g03555 430 Pfam Protein tyrosine and serine/threonine kinase 115 375 IPR001245 GO:0004672|GO:0006468
Trre11g03555 430 FunFam Calcium/calmodulin-regulated receptor-like kinase 1 87 188 - -
Trre11g03555 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Trre11g03555 430 CDD STKc_IRAK 119 378 - -
Trre11g03555 430 Gene3D Phosphorylase Kinase; domain 1 85 188 - -
Trre11g03555 430 FunFam calcium/calmodulin-regulated receptor-like kinase 1 189 397 - -
Trre11g03555 430 PANTHER OS01G0750732 PROTEIN 4 393 - -
Trre11g03555 430 MobiDBLite consensus disorder prediction 402 424 - -
Trre11g03555 430 MobiDBLite consensus disorder prediction 383 430 - -
Trre11g03555 430 SUPERFAMILY Protein kinase-like (PK-like) 105 384 IPR011009 -
Trre11g03555 430 SMART serkin_6 113 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g03555 430 ProSiteProfiles Protein kinase domain profile. 113 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03555 Trre-Chr11 48681041 48684852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03555 24 375 Glycoside Hydrolase AT3G07070 40.591 7.87e-75 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Trre11g03555 PK_Tyr_Ser-Thr 7e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03555 - - gmx:100799586 758.444