Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03554 ATGTCAATTGACAGTAACCACCACACGCACACAAGAACGCGAGTGAATACACCGCCCGCGTTGAGAAAAAGCCACGAATGTTCGTTTCGTTCACAGCGGCAATACCCAAACTTTTCAATTATTCGGCGCCGTATTTTGTTCTTCGTTTTTTTTAAGGTTTATATACTTTTGTCGAAACTATTGAGGATTACCATACATGCAATCTTTTTCGACTATTCCATCACTACAAAATGTGACGGCCACGAGCATTACAATTCGGGCGAAATCTTATCCGGTATAAGCTCCTCTTATAACTCATCACTGGAAACCAACCATTATATGCATAGATCGGTTTCATCGGTCGATAGTCTCAAAGAAAGTTTGCAATTATATTCTGCTAGAAATTCTTCTCTACCAACTAACCAGAAAATGAGACATGTCTTGTTGGAACTAGAAACTGCATTGATGGCCCCTGATGATAACGAAGTTACGACATCTAATTCTTCATTGGGTGATAGCATCAGGGAGACGGCATCCGGTCCGAGATATAGATCATGGAGCCATGAGAACCAAGGGTCACAATATATTCAAAGTCAGCCATCACATGTTACCAACGGTAGGCAATCAAATGAAGTTGTGCATGTTGAGAAACGGCGAAAGTTGGAGGAGGAATCATCTCTACAAGCATTTCCATCAGGCGATTTAAAGCAATTACTGATTGCATGTGCCAAAGCCATGGCTGAAAACAACACTCAAGGTTTTGACCGATATATAGAAATGGCTAGAAATGCTGTGTCTATCAATGGAGAGCCAATCCAGAGGCTTGGTGCTTATATGGTAGAAGGGCTTGTTGCAAGGAAGGAGGCGTCAGGGAATAGCATCTATCACGCTCTTAAGTGCCGTGAGCCAGAAGGCGAAGAGTTACTCACATACATGCAACTACTTTTCGAAATCTGTCCCTACTTAAAATTTGGTTACATGGCTGCCAATGGAGCCATCGCCGAAGCTTGCAGGAATGAGGATCGCATACACATCATAGATTTTCAGATTGCTCAAGGAACTCAGTGGATGACACTTCTTCAAGCTCTTGCTGCAAGACCTGGCGGGGCTCCCCACGTGCGGATCACAGGAATCGATGACCCCGTCTCTAAATATGCACGCGGTGATGGACTAGAAGTAGTCGGGAAAAGATTGGCCTTGATGTCCAAGAAATTCAACATCCCGGTTGAGTTTCACGGTATTCCTGTTTTCGGTCCCGACGTTACAAGAGACATGCTTGATATCAGAGTCGGAGAAGCTTTGGCTGTGAATTTTCCATTGCAACTACATCACACTGCTGATGAGAGTGTCGATGTGAACAATCCAAGAGATGGACTTCTAAGATTGGTGAAATCTCTTTCTCCAAAAGTGGTCACACTTGTGGAGCAAGAATCAAACACAAACACAACACCTTTCTTCAACAGGTTCATAGAAACTTTAGATTACTACTTGGCGATCTTCGAGTCCATCGATGTCACGCTCTCCCGAGACAGCAAAGAAAGGATTAACGTCGAGCAACATTGTTTGGCTCGTGATATCGTGAATGTCATTGCTTGCGAAGGCAAGGAAAGAGTCGAGCGTCATGAACTGTTCGGTAAGTGGAAGTCTAGGTTGACGATGGCCGGATTTCGTCAATGTCCTTTAAGTTCTTATGTGAATTCTGTTATAAGAAGCCTTCTGAGATGCTATTCAGAACACTATACACTTGTGGAGAAAGATGGGGCAATGCTCTTAGGGTGGAAGAACAGAAATTTGATATCAGCTTCAGCTTGGCATTGA 1797 0.4357 MSIDSNHHTHTRTRVNTPPALRKSHECSFRSQRQYPNFSIIRRRILFFVFFKVYILLSKLLRITIHAIFFDYSITTKCDGHEHYNSGEILSGISSSYNSSLETNHYMHRSVSSVDSLKESLQLYSARNSSLPTNQKMRHVLLELETALMAPDDNEVTTSNSSLGDSIRETASGPRYRSWSHENQGSQYIQSQPSHVTNGRQSNEVVHVEKRRKLEEESSLQAFPSGDLKQLLIACAKAMAENNTQGFDRYIEMARNAVSINGEPIQRLGAYMVEGLVARKEASGNSIYHALKCREPEGEELLTYMQLLFEICPYLKFGYMAANGAIAEACRNEDRIHIIDFQIAQGTQWMTLLQALAARPGGAPHVRITGIDDPVSKYARGDGLEVVGKRLALMSKKFNIPVEFHGIPVFGPDVTRDMLDIRVGEALAVNFPLQLHHTADESVDVNNPRDGLLRLVKSLSPKVVTLVEQESNTNTTPFFNRFIETLDYYLAIFESIDVTLSRDSKERINVEQHCLARDIVNVIACEGKERVERHELFGKWKSRLTMAGFRQCPLSSYVNSVIRSLLRCYSEHYTLVEKDGAMLLGWKNRNLISASAWH 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03554 598 MobiDBLite consensus disorder prediction 153 202 - -
Trre11g03554 598 MobiDBLite consensus disorder prediction 176 202 - -
Trre11g03554 598 MobiDBLite consensus disorder prediction 1 23 - -
Trre11g03554 598 ProSiteProfiles GRAS family profile. 219 598 IPR005202 -
Trre11g03554 598 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 193 594 IPR005202 -
Trre11g03554 598 Pfam GRAS domain family 228 597 IPR005202 -
Trre11g03554 598 MobiDBLite consensus disorder prediction 153 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03554 Trre-Chr11 48641466 48644795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03554 219 597 GRAS Transcription Factor Family AT1G50600 62.269 1.03e-173 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre11g03554 GRAS 2.5e-128 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03554 - - gmx:100799073 853.973