Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03542 ATGGCTGATGATGATCAATTTCATCATTCAAGTGGAAATTGGTGGGACACAGCATCAAGAAACATGAGATTTGATCATCAAAGTGGAGGAACATCACAATCTTCAAATTCTTCTGCCATCACCAACAACAACATAGTTGATTTTGGTTGGCAAAATTCAGATATGGTAGAGATAAAACCAAGATCTTCCTTGGAAAATTCTTTTCATGATACTCAAAAACTTCAACAAAATCAAGACTCTTCAACTTCTTCTGACCCCAACTTGCATATGATGGGTTTAGGCCTTTCTTCTCATTCCATTGATTGGAATCAACCTTCTTTGATAAGAGGTGAAAAGGGAGCAGAGAATAGTTTCAGCACAATGTTACAAGAGAATTTGAGTTCAACAAGGAACAATTTTGAGCAAGAAAATGTGATGGGGATGTGTCAACAAGTGAATAGAAGTAATTTCTCTTTGGATCAAAATCAAAATCAATTTAGTCCTCAATATAGTTCTGGAGATAGCAATGTTATTACAAGCCAATGTTTACCAACAAATTTTCAAATGGATTCTTCAACTTTATATGGAACTCCACCAATTTTACAAGGTTCATTTGAGAATAGATCCATGAGTAGTTTTCCATATCCAACAAATAACTATGGATTAAATTCTAATAATGAGTTGGATATGAATATGCCTTCTAATGATTGGTCTAATAAAGTTCCTCAATTTTTTATGAGAACTTCACCTCCAAAACAACCTACCAATAACCAATTGCATTTTACTAACAACACCCCCTTTTGGAATGCTTCTCATGAGGGTGCTAATTCCATCAAGGATGTTAGGTCAAGTTTCTTCCCTACTTTGCAACCTCAATTCTCCACCCCAACTTTTGATCCACACTCAAAGAATATATCTGAGGTGAATACTGTGGTGAAGAAAAGTGGAAGTGAGCCAGCACCCAAAAGGACCCGTAACGAAACCCCATCAACTTTGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGAGACAGAATCACTGCACTCCAACAATTAGTGTCTCCTTTTGGAAAGACGGATACAGCCTCAGTGCTTTCTGAAGCCATTGAATACATCAAATTCCTCCATGAACAGGTTACAGTTTTGAGCACACCATATATGAAAATTGGAGCTCCAACAGAGATTCATCAGCAGAATTCTAGTAAATCAAAAAAATCAGAGGGTGCAAAGCAAGACCTTAAAAGCCGAGGGCTATGTTTGGTACCGGTTTCTAGCACGTTTCCAGTGACTCATGAAACAACAGTTGATTTTTGGACACCAACCTTCGGAGGAACATCAAGATAA 1323 0.3741 MADDDQFHHSSGNWWDTASRNMRFDHQSGGTSQSSNSSAITNNNIVDFGWQNSDMVEIKPRSSLENSFHDTQKLQQNQDSSTSSDPNLHMMGLGLSSHSIDWNQPSLIRGEKGAENSFSTMLQENLSSTRNNFEQENVMGMCQQVNRSNFSLDQNQNQFSPQYSSGDSNVITSQCLPTNFQMDSSTLYGTPPILQGSFENRSMSSFPYPTNNYGLNSNNELDMNMPSNDWSNKVPQFFMRTSPPKQPTNNQLHFTNNTPFWNASHEGANSIKDVRSSFFPTLQPQFSTPTFDPHSKNISEVNTVVKKSGSEPAPKRTRNETPSTLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTVLSTPYMKIGAPTEIHQQNSSKSKKSEGAKQDLKSRGLCLVPVSSTFPVTHETTVDFWTPTFGGTSR 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03542 440 SMART finulus 330 374 IPR011598 GO:0046983
Trre11g03542 440 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 319 368 IPR011598 GO:0046983
Trre11g03542 440 MobiDBLite consensus disorder prediction 64 92 - -
Trre11g03542 440 FunFam Transcription factor bHLH123 family 329 392 - -
Trre11g03542 440 MobiDBLite consensus disorder prediction 64 90 - -
Trre11g03542 440 CDD bHLH_AtbHLH_like 325 376 IPR045239 -
Trre11g03542 440 Gene3D - 329 398 IPR036638 GO:0046983
Trre11g03542 440 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 120 421 - -
Trre11g03542 440 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 329 383 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03542 Trre-Chr11 48360238 48363894 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03542 109 440 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 43.005 7.43e-67 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03542 - - gmx:100778697 549.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03542 11 48360238 48363894 Trre11g03542 11 48360238 48363894 ECH