Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03541 ATGGCTGATGATGATCAATTTCATCATTCAAGTGGAAATTGGTGGGACACAGCATCAAGAAACATGAGATTTGATCATCAAAGTGGAGGAACATCACAATCTTCAAATTCTTCTGCCATCACCAACAACAACATAGTTGATTTTGGTTGGCAAAATTCAGATATGGTAGAGATAAAACCAAGATCTTCCTTGGAAAATTCTTTTCATGATACTCAAAAACTTCAACAAAATCAAGACTCTTCAACTTCTTCTGACCCCAACTTGCATATGATGGGTTTAGGCCTTTCTTCTCATTCCATTGATTGGAATCAACCTTCTTTGATAAGAGGTGAAAAGGGAGCAGAGAATAGTTTCAGCACAATGTTACAAGAGAATTTGAGTTCAACAAGGAACAATTTTGAGCAAGAAAATGTGATGGGGATGTGTCAACAAGTGAATAGAAGTAATTTCTCTTTGGATCAAAATCAAAATCAATTTAGTCCTCAATATAGTTCTGGAGATAGCAATGTTATTACAAGCCAATGTTTACCAACAAATTTTCAAATGGATTCTTCAACTTTATATGGAACTCCACCAATTTTACAAGGTTCATTTGAGAATAGATCCATGAGTAGTTTTCCATATCCAACAAATAACTATGGATTAAATTCTAATAATGAGTTGGATATGAATATGCCTTCTAATGATTGGTCTAATAAAGTTCCTCAATTTTTTATGAGAACTTCACCTCCAAAACAACCTACCAATAACCAATTGCATTTTACTAACAACACCCCCTTTTGGAATGCTTCTCATGAGGGTGCTAATTCCATCAAGGATGTTAGGTCAAGTTTCTTCCCTACTTTGCAACCTCAATTCTCCACCCCAACTTTTGATCCACACTCAAAGAATATATCTGAGGTGAATACTGTGGTGAAGAAAAGTGGAAGTGAGCCAGCACCCAAAAGGACCCGTAACGAAACCCCATCAACTTTGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGAGACAGAATCACTGCACTCCAACAATTAGTGTCTCCTTTTGGAAAGACGGATACAGCCTCAGTGCTTTCTGAAGCCATTGAATACATCAAATTCCTCCATGAACAGGTTACAGTTTTGAGCACACCATATATGAAAATTGGAGCTCCAACAGAGATTCATCAGAATTCTAGTAAATCAAAAAAATCAGAGGGTGCAAAGCAAGACCTTAAAAGCCGAGGGCTATGTTTGGTACCGGTTTCTAGCACGTTTCCAGTGACTCATGAAACAACAGTTGATTTTTGGACACCAACCTTCGGAGGAACATCAAGATAA 1320 0.3735 MADDDQFHHSSGNWWDTASRNMRFDHQSGGTSQSSNSSAITNNNIVDFGWQNSDMVEIKPRSSLENSFHDTQKLQQNQDSSTSSDPNLHMMGLGLSSHSIDWNQPSLIRGEKGAENSFSTMLQENLSSTRNNFEQENVMGMCQQVNRSNFSLDQNQNQFSPQYSSGDSNVITSQCLPTNFQMDSSTLYGTPPILQGSFENRSMSSFPYPTNNYGLNSNNELDMNMPSNDWSNKVPQFFMRTSPPKQPTNNQLHFTNNTPFWNASHEGANSIKDVRSSFFPTLQPQFSTPTFDPHSKNISEVNTVVKKSGSEPAPKRTRNETPSTLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTVLSTPYMKIGAPTEIHQNSSKSKKSEGAKQDLKSRGLCLVPVSSTFPVTHETTVDFWTPTFGGTSR 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03541 439 SMART finulus 330 374 IPR011598 GO:0046983
Trre11g03541 439 FunFam Transcription factor bHLH123 family 329 392 - -
Trre11g03541 439 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 319 368 IPR011598 GO:0046983
Trre11g03541 439 MobiDBLite consensus disorder prediction 64 92 - -
Trre11g03541 439 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 120 420 - -
Trre11g03541 439 MobiDBLite consensus disorder prediction 64 90 - -
Trre11g03541 439 CDD bHLH_AtbHLH_like 325 376 IPR045239 -
Trre11g03541 439 Gene3D - 329 385 IPR036638 GO:0046983
Trre11g03541 439 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 329 383 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03541 Trre-Chr11 48360238 48363894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03541 109 439 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 43.523 6.78e-67 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03541 - - gmx:100778697 551.977