Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03539 ATGTCTTTAATCATAATGAGTATAATTTTCTATGCTTATCATATACTTATATATTTTTCTCAAATTTCTCTAGCAGTTAACTCAATATCTCAATCCATTTCCTTAATAGATGATGGAAACACTTTAGTTTCCAAAGGTGGAATCTATGAACTTGGATTCTTCACACCTGGAAATTCCAACAAACGTTACCTTGGAATTTGGTACAAGAAAATTCCAATTCAAACAGTTGTTTGGGTTGCAAATAGAATCAATCCAATCAATGATTCATCTGGAACATTAACATTAAACAACATCACTGGAAACCTTGTCCTCACTCAGAAGAATAATGAAACTGTTGTTTGGTCTACAACATCAAATTCTCTTCAAAAAAAACAAGAGATATCGGTAGTAGCGATTCTTTTAGATACTGGAAATCTTGTGCTAATCGACGAGAAAGAAGAAAATGAAGAATCTTTCTTGTGGCAGAGTTTTGATTATCCTACTGACACTTTCTTACCAGAAATGAAGTTTGGTTTGGATTTCAAAACCGGTCTTAATCGCCGTTTAACTGCTTGGAAAAGTCCCGATGATCCATCACCGAGCGATTTTTCATACGGTATGGTTCCACATAACTATCCTGATGCATATATGATGAAAGGTGATAAAAAATTCTACAGAAGTGGACCATGGAATGGTTTACGTTCAAGTGGTTCGCCACAAATTAGGCCGAATCCAATTTATGATTACAGGTTTGTTTCTAATAAAGATGAATTTTACTACACTTATAGCCTAAAAAACTCGTCTGCTGTTACGCGATTAGTATTAAATGCAACTGCGTCCATTCGTTACCGTTATTTGTGGATTGAGTCAGCGAAAAGATGGGAAATCTACACGTCGGTACCATTGGATTTATGTGATAGTTATGCACTTTGTGGAGCCTATTCAAGTTGTGTTATATCTGATTCACCTGTGTGTCAATGTATGAAAGGTTTTAAACCTAAGTCTCCGCAAGCGTGGTATGCGATGGATTGGTCTAATGGATGTGTCCGAAATAAGGCGTTGCGTTGCGAGGAAAAATACAAGGATGGATTTGTTAAATTGAGTGGTATGAAAGTACCTGACACTACAAATAGTTGGATAGATCAAACAATTGGTTTAAAGGAATGTAGAGTGAAGTGTTCGAATAATTGTTCTTGTATGGCATATGCAAATTCAGATGTAAGAGGAGAAGGAAGTGGTTGTGCTTTGTGGTTTGGTGATTTAATTGATATTAGACAATTTGCAGCTGGAGGGCAAGATTTGTATGTTAGAATGGATTCTTCCGAATTAGAACATGTCAATGAGGGTCACAAGAAGAAAGGAGTTGTAGTGGCAGTAATAGTTACTCTTTCCATGGCAATACTTTGTAGTATACTCATACTTGGTTGGTGTTATAGACAGAAATCCACCACTTATGTTAAAGATATATTAGATTTCAGTATCAAAGAAGATCATCAAAACAGTGGGATGCAAGTAGATGATGGGGATTTGCCTGTGTTTAACTTGTCAACAATAGCAAAAGCCACTAACAACTTTACAATCAGTAACAAAATTGGAGAAGGTGGTTTTGGACCTGTATACAAGGGAATTCTAGCTGATGGAGTTGAAATTGCTGTGAAAAGGCTTTCAACAAGCTCAGGCCAAGGATTGAATGAGTTTAAAAATGAAGTAAAATTGATTGCGAAACTTCAACATCGAAATCTTGTAAAGCTTCTTGGTTGTTGCCTTGAAGGAGAAGAAACAATGTTGGTTTATGAATACATGCCTAATAGTAGCTTAGACTCCTTTATTTTTGATAAGCAGAAAAGTGAATTACTCGATTGGTCAAAGCGTTTCGACATTATATGTGGAATTGCTAGGGGACTTGTCTATCTTCATCAGGATTCGAGACTGAGGATTATTCACAGAGATCTAAAATTGAGTAATGTTTTACTAGATAAGGAAATGAATCCCAAAATTTCAGATTTTGGCATGGCTAGAATTTTCGGAGGAGATCAAAATGAAGGAAAGACAAGGAGAATAGTTGGAACATATGGTTACATGGCACCAGAATATGCTACAGATGGCTTATTTTCAGTGAAGTCAGATGTCTTCAGCTTCGGTGTTTTGTTGATGGAGATTATATCGGGAAAAAGAAGTAGAGGATACTATAATCAAAACCAAAGCCAAAATCTCATAGGCTATGCATGGAAACTTTGGAAAGAAGGAAGACCACTAAAATTGATTGATAAAAAGATAGGAGACTCTTGTTTTATATCACAAATATTACATTGTTTTCATGTTAGTCTCTTATGTGTTCAACAAAATCTAGAGGATAGGCCAATAATGTCAAGTGTGATTCTAATGTTGGTAAGTGATTTTGAATTGCCTGAACCAAAACAGCCAGGATTCTTTTTGAAAGATTCAAGTGAAGGAGAGTCCTATACAAGTAAACAGCTGCCAAGTTCTACAAATGAAATAACCATTACATTATTGGAGGCTAGATGA 2505 0.3573 MSLIIMSIIFYAYHILIYFSQISLAVNSISQSISLIDDGNTLVSKGGIYELGFFTPGNSNKRYLGIWYKKIPIQTVVWVANRINPINDSSGTLTLNNITGNLVLTQKNNETVVWSTTSNSLQKKQEISVVAILLDTGNLVLIDEKEENEESFLWQSFDYPTDTFLPEMKFGLDFKTGLNRRLTAWKSPDDPSPSDFSYGMVPHNYPDAYMMKGDKKFYRSGPWNGLRSSGSPQIRPNPIYDYRFVSNKDEFYYTYSLKNSSAVTRLVLNATASIRYRYLWIESAKRWEIYTSVPLDLCDSYALCGAYSSCVISDSPVCQCMKGFKPKSPQAWYAMDWSNGCVRNKALRCEEKYKDGFVKLSGMKVPDTTNSWIDQTIGLKECRVKCSNNCSCMAYANSDVRGEGSGCALWFGDLIDIRQFAAGGQDLYVRMDSSELEHVNEGHKKKGVVVAVIVTLSMAILCSILILGWCYRQKSTTYVKDILDFSIKEDHQNSGMQVDDGDLPVFNLSTIAKATNNFTISNKIGEGGFGPVYKGILADGVEIAVKRLSTSSGQGLNEFKNEVKLIAKLQHRNLVKLLGCCLEGEETMLVYEYMPNSSLDSFIFDKQKSELLDWSKRFDIICGIARGLVYLHQDSRLRIIHRDLKLSNVLLDKEMNPKISDFGMARIFGGDQNEGKTRRIVGTYGYMAPEYATDGLFSVKSDVFSFGVLLMEIISGKRSRGYYNQNQSQNLIGYAWKLWKEGRPLKLIDKKIGDSCFISQILHCFHVSLLCVQQNLEDRPIMSSVILMLVSDFELPEPKQPGFFLKDSSEGESYTSKQLPSSTNEITITLLEAR 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03539 834 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 484 593 - -
Trre11g03539 834 CDD B_lectin 38 160 IPR001480 -
Trre11g03539 834 Gene3D - 25 157 IPR036426 -
Trre11g03539 834 ProSiteProfiles Protein kinase domain profile. 518 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g03539 834 PIRSF SRK 1 834 IPR024171 GO:0004674
Trre11g03539 834 SMART serkin_6 518 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g03539 834 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 348 431 - -
Trre11g03539 834 ProSiteProfiles Bulb-type lectin domain profile. 27 154 IPR001480 -
Trre11g03539 834 CDD PAN_AP_plant 347 430 - -
Trre11g03539 834 CDD STKc_IRAK 524 789 - -
Trre11g03539 834 Pfam D-mannose binding lectin 75 186 IPR001480 -
Trre11g03539 834 ProSitePatterns Serine/Threonine protein kinases active-site signature. 639 651 IPR008271 GO:0004672|GO:0006468
Trre11g03539 834 SMART ntp_6 352 431 IPR003609 -
Trre11g03539 834 Pfam PAN-like domain 349 417 IPR003609 -
Trre11g03539 834 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 191 IPR036426 -
Trre11g03539 834 Pfam S-locus glycoprotein domain 218 328 IPR000858 GO:0048544
Trre11g03539 834 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 594 797 - -
Trre11g03539 834 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 16 780 - -
Trre11g03539 834 SUPERFAMILY Protein kinase-like (PK-like) 500 789 IPR011009 -
Trre11g03539 834 Pfam Domain of unknown function (DUF3403) 793 834 IPR021820 GO:0004674
Trre11g03539 834 Gene3D Phosphorylase Kinase; domain 1 481 593 - -
Trre11g03539 834 Gene3D Transferase(Phosphotransferase) domain 1 594 795 - -
Trre11g03539 834 ProSiteProfiles PAN/Apple domain profile. 349 432 IPR003609 -
Trre11g03539 834 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 22 157 - -
Trre11g03539 834 Pfam Protein tyrosine and serine/threonine kinase 519 729 IPR001245 GO:0004672|GO:0006468
Trre11g03539 834 SMART blect_4 33 160 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03539 Trre-Chr11 48325909 48329522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03539 422 815 Receptor kinase-like Gene Family AT4G23190 49.261 1.62e-128 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre11g03539 PK_Tyr_Ser-Thr 9.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03539 - - gmx:100778155 1297.34