Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03538 ATGAGACAAGCAGGAGCATATTCAAATTTACTATGTGGAGGAATATCAGGAAGAACAGGTCCACATTCATTACCATTAGCAAGAATAAAAAAGATAATGAAGAATTCTAGTGAAGATGTGAAAATGATATCAGGTGTAGCACCAATTGTTTTCTCAAAAGCTTGTGAACTTTTCATTGAAGAACTTACAAGGAGGTCTTGGATTATGGCTATTGATGGTAAAAGAAGAACTTTGAATAAAGAAGATGTTGCTTCTGCTGTTATAGCTACTGATATATTTGATTTTTTGATTACTTTGGTTTCTAATTCTGATGCATCTGATGCTAATGTTATCCAAATGGAAACTATATGA 351 0.3248 MRQAGAYSNLLCGGISGRTGPHSLPLARIKKIMKNSSEDVKMISGVAPIVFSKACELFIEELTRRSWIMAIDGKRRTLNKEDVASAVIATDIFDFLITLVSNSDASDANVIQMETI 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03538 116 SUPERFAMILY Histone-fold 15 96 IPR009072 GO:0046982
Trre11g03538 116 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Trre11g03538 116 Gene3D Histone, subunit A 14 102 IPR009072 GO:0046982
Trre11g03538 116 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 22 104 - -
Trre11g03538 116 FunFam Nuclear transcription factor Y subunit C 9 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03538 Trre-Chr11 48320575 48320925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03538 22 107 CCAAT-HAP5 Transcription Factor Family AT1G54830 62.791 1.28e-32 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Trre11g03538 CBFD_NFYB_HMF 7.6e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03538 - - gmx:100777614 193.741