Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03512 ATGTATTCCGAACCAGAATTTCCCATTCCAAGTAGGAAGGATTTGGAAACCATCAAGTACTACTTCGACAACGAAACAGAGTTCATGGCTACAAGAAACTTCTTCAACGACGATCGGAACATTCTTATCCGCAGAAATGCCGTTTCAATAATCGCTAAGGTAACAAAGAAGATTGATCCAGATGCATTTGTTCCATATCGTGCTATGAACTACTTTGATCGCTTCTTATCACGTTGCGACATGACGGATGTGGAAGGTCGGACTGATACCGAAAAAGTTCATTTGATTGCTATATCTTGTTTCACCATATCTGCCAAGATGTGGATAGACCTTAGTCACATAATTCTCCTAAAAGACTCATTCCCGGTTGACCAGTTTTTGTCCGACGTAAAGAGGGACATGAGTGTGAGGCTAAGTCATGACATGGTAATGAGAATGGAGTTTCTCATTCTACAAGTACTTAGCTGGAAAATGAAATCTGTGACTGCCTTCTGTTTTCTGAACCACTATTACCCTCACTTTAGACAATTCCGTGGTTTTAAACGCCGTAGCATTAATGAGATCATAGTTCAAGCACAAGGAGAGCACACTTTTGTTGACTTCATGCCTTCTCACATTGCATTCTCCGCTTTTCTGGCTGCTGCCAAAATTGCATATCCCTTAAAGTATAAGGAAATTGCAGAAGACATTGAAAGCAAACTTAACGATCAAGTGAAGGAATGTGCAGAGAAGATGATAGATCTTTGCAGAAGGCTGAACATCCTGATAGATACCCCTAGATCAGGAATTCACTCTGCTTCAAGTGAAGCCGTGGCAGTACCCCAAAAGGAAACCAAAGATAAAGCGGTGGTGGTTGATGATTCATCTGAAGAAGAAGATCGGACTGTGTTAATCGACAAGCGAAGACAGGACATAGGAAAGATGGAGACTTCTCAATTGCAGGTGCAGGAGGGGCCGGAGAAGTTATCTGATAACAAATATGTAGCAGCAGAAGAGACCAAGGCATCCATTTCAGAGATTGAAGAGGAGCTTGTAGAACCAAAGAAGCTAATGAACTTTGAGCTGAAGTGGGCCACTGATGTTCCATCACTAGAAGCGCAGCCACGAGAGTCTATAACTATAAGCTTTAGGATACCAGGGACCGGAAAGAATATAAATTTAGGCTGCTGTACCTGCAACATCAGTTAG 1188 0.4209 MYSEPEFPIPSRKDLETIKYYFDNETEFMATRNFFNDDRNILIRRNAVSIIAKVTKKIDPDAFVPYRAMNYFDRFLSRCDMTDVEGRTDTEKVHLIAISCFTISAKMWIDLSHIILLKDSFPVDQFLSDVKRDMSVRLSHDMVMRMEFLILQVLSWKMKSVTAFCFLNHYYPHFRQFRGFKRRSINEIIVQAQGEHTFVDFMPSHIAFSAFLAAAKIAYPLKYKEIAEDIESKLNDQVKECAEKMIDLCRRLNILIDTPRSGIHSASSEAVAVPQKETKDKAVVVDDSSEEEDRTVLIDKRRQDIGKMETSQLQVQEGPEKLSDNKYVAAEETKASISEIEEELVEPKKLMNFELKWATDVPSLEAQPRESITISFRIPGTGKNINLGCCTCNIS 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03512 395 PANTHER CYCLINS 19 246 IPR039361 -
Trre11g03512 395 Gene3D - 31 159 - -
Trre11g03512 395 Pfam Cyclin, N-terminal domain 17 158 IPR006671 -
Trre11g03512 395 Pfam Cyclin, C-terminal domain 161 250 IPR004367 -
Trre11g03512 395 SUPERFAMILY Cyclin-like 14 158 IPR036915 -
Trre11g03512 395 SUPERFAMILY Cyclin-like 141 254 IPR036915 -
Trre11g03512 395 Gene3D - 23 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03512 Trre-Chr11 47895582 47898674 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03512 14 241 Core Cell Cycle Gene Families AT4G03270 29.918 2.64e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03512 - K18812 tpra:123896490 587.03