Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03511 ATGTATTCCGAACCAGAATTTCCCATTCCAAGTAGGAAGGATTTGGAAACCATCAAGTACTACTTCGACAACGAAACAGAGTTCATGGCTACAAGAAACTTCTTCAACGACGATCGGAACATTCTTATCCGCAGAAATGCCGTTTCAATAATCGCTAAGGTAACAAAGAAGATTGATCCAGATGCATTTGTTCCATATCGTGCTATGAACTACTTTGATCGCTTCTTATCACGTTGCGACATGACGGATGTGGAAGGTCGGACTGATACCGAAAAAGTTCATTTGATTGCTATATCTTGTTTCACCATATCTGCCAAGATGTGGATAGACCTTAGTCACATAATTCTCCTAAAAGACTCATTCCCGGTTGACCAGTTTTTGTCCGACGTAAAGAGGGACATGAGTGTGAGGCTAAGTCATGACATGGTAATGAGAATGGAGTTTCTCATTCTACAAGTACTTAGCTGGAAAATGAAATCTGTGACTGCCTTCTGTTTTCTGAACCACTATTACCCTCACTTTAGACAATTCCGTGGTTTTAAACGCCGTAGCATTAATGAGATCATAGTTCAAGCACAAGGAGAGCACACTTTTGTTGACTTCATGCCTTCTCACATTGCATTCTCCGCTTTTCTGGCTGCTGCCAAAATTGCATATCCCTTAAAGTATAAGGAAATTGCAGAAGACATTGAAAGCAAACTTAACGATCAAGGACAGGTGAAGGAATGTGCAGAGAAGATGATAGATCTTTGCAGAAGGCTGAACATCCTGATAGATACCCCTAGATCAGGAATTCACTCTGCTTCAAGTGAAGCCGTGGCAGTACCCCAAAAGGAAACCAAAGATAAAGCGGTGGTGGTTGATGATTCATCTGAAGAAGAAGATCGGACTGTGTTAATCGACAAGCGAAGACAGGACATAGGAAAGATGGAGACTTCTCAATTGCAGGTGCAGGAGGGGCCGGAGAAGTTATCTGATAACAAATATGTAGCAGCAGAAGAGACCAAGGCATCCATTTCAGAGATTGAAGAGGAGCTTGTAGAACCAAAGAAGCTAATGAACTTTGAGCTGAAGTGGGCCACTGATGTTCCATCACTAGAAGCGCAGCCACGAGAGTCTATAACTATAAGCTTTAGGATACCAGGGACCGGAAAGAATATAAATTTAGGCTGCTGTACCTGCAACATCAGTTAG 1194 0.4221 MYSEPEFPIPSRKDLETIKYYFDNETEFMATRNFFNDDRNILIRRNAVSIIAKVTKKIDPDAFVPYRAMNYFDRFLSRCDMTDVEGRTDTEKVHLIAISCFTISAKMWIDLSHIILLKDSFPVDQFLSDVKRDMSVRLSHDMVMRMEFLILQVLSWKMKSVTAFCFLNHYYPHFRQFRGFKRRSINEIIVQAQGEHTFVDFMPSHIAFSAFLAAAKIAYPLKYKEIAEDIESKLNDQGQVKECAEKMIDLCRRLNILIDTPRSGIHSASSEAVAVPQKETKDKAVVVDDSSEEEDRTVLIDKRRQDIGKMETSQLQVQEGPEKLSDNKYVAAEETKASISEIEEELVEPKKLMNFELKWATDVPSLEAQPRESITISFRIPGTGKNINLGCCTCNIS 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03511 397 Pfam Cyclin, C-terminal domain 161 252 IPR004367 -
Trre11g03511 397 Gene3D - 23 246 - -
Trre11g03511 397 SUPERFAMILY Cyclin-like 14 158 IPR036915 -
Trre11g03511 397 PANTHER CYCLINS 19 248 IPR039361 -
Trre11g03511 397 Pfam Cyclin, N-terminal domain 17 158 IPR006671 -
Trre11g03511 397 Gene3D - 31 159 - -
Trre11g03511 397 SUPERFAMILY Cyclin-like 141 256 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03511 Trre-Chr11 47895582 47898674 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03511 14 243 Core Cell Cycle Gene Families AT4G03270 29.098 3.96e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03511 - K18812 tpra:123896490 596.275