Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03509 ATGGCTTCCAAATCAAAAATGGCTTCCAAATCCAAAGTTCCAACAATGGCTTCCGATGTAGAGTTCACCATTCTCACTGAGAAAGAAGCGCTATTCATAAGGACCACCTACTTCCCCGTTCAACATGAATTCATGCCTACACCAAACTTCTTCAAAAATGCTACGAACATTCTTTTTCGTCGCCATGCCGTTTCAATAATCGCCAAACACTCGAGGAGTATCGGTCCCGATACATTTATTCCATATCTTGCTATGAACTATTTTGATCGCTTCTTTTCCATGGACAAAACGTTCAAGGAGGATGTGGAAGGTTGTAATAATGATACTGAAAAAGTTCGTTTGATTGCTATCTCTTGTCTCTCCATATCTGCCAAGTTAAGGATAAAAGAATTCTCAGTTGAACAGTTTTTGAGGGACAATAATTTGATGATAACTCCTCAGATGATAATGAGAATGGAGTTTAAAATTCTCCATGAACTCCGCTGGAAAATCCGACCTGTGACTCCCTTCACCTATCTGAACTTCTATTACCGTTACTTTAGACAATTTGGTGGTTATAAACGCCGTTGCATTAATGAGATCATAGTTCAAGCTCAAGGAGACCACACCTTTGTTCACTACCCACCTACTATGATTGCATCCACCGCTTTTCTGGCTGTTTCTCGAATGGCATATCCCACAAAGTATAACGAAATAGCACATCCCACGGCGCTTGCCAGACTTGGCTCTAAAAAGCAGGTGTTGGAATGTGCAAAGAAGATTTTTAATCTTTGCCGGACTATGAAGATCCGGATTGAGATCCCTGAATCAGGAGGTCGCAGCGCTTTAAGTAAAGTCATGGCAGTACGCCAAAAGCAAATCAAAGACAGAAGGGAAAAAGCGGCGGCAGTGCTTGATTCATCTGAAGAAGAAGAAGAAGAAGAAGGAGGGACTGCATTAGTCAGGCGAAAACGGAACACGGGAAATACCACAGGGACTTCTCAGGTGCAGGTGCCAGTAAAGGTGGAGGAGGTGGTCGATAAATCTGATAAAAAAGGTTTAGCAACAGAGGAGATTGAGGCAGAAAATATAAGGGCAAAGGAGGTGGTGGTTGATTCATCTGAAGAAGAAGAAGAAGAAGAAGAAGAAGATACGACTCCATTAATCAGGCGAAAACGGAACATGGGCAAGACCACAGAGACTTCTCAGGTGCAGGTGCCAGTAAAGGTGGGGGAGGTAATGGACAAGGGCAAGGAAACGGCAGTGGAAGTAACAAAAACATCTGTTGAAGATAAAGCAAGGGTTGAGGCTATAATCCGACGAGGATTGGAAAACGGCAAGGCAGTAGTGGGTGAGGAGCCACAAACGCAGATAGGCGGGTCCGTTTCAGAGATTTTAGAGCTTGTAGCACCTAAGAAGCTAATGATTTTTGAGCTGAAGTGGCCCACAGAAGTTCCACTACTAGAACTACTAGATATAAAACAAGCGCTGCCAGAAGTACTAGAAGAAGAGGAAGAAGAGTCGCAGACAGATGACCAAGATACTGACAAGAAAAAAAATCGTGGCTGCAACATTGTTTAG 1560 0.4321 MASKSKMASKSKVPTMASDVEFTILTEKEALFIRTTYFPVQHEFMPTPNFFKNATNILFRRHAVSIIAKHSRSIGPDTFIPYLAMNYFDRFFSMDKTFKEDVEGCNNDTEKVRLIAISCLSISAKLRIKEFSVEQFLRDNNLMITPQMIMRMEFKILHELRWKIRPVTPFTYLNFYYRYFRQFGGYKRRCINEIIVQAQGDHTFVHYPPTMIASTAFLAVSRMAYPTKYNEIAHPTALARLGSKKQVLECAKKIFNLCRTMKIRIEIPESGGRSALSKVMAVRQKQIKDRREKAAAVLDSSEEEEEEEGGTALVRRKRNTGNTTGTSQVQVPVKVEEVVDKSDKKGLATEEIEAENIRAKEVVVDSSEEEEEEEEEDTTPLIRRKRNMGKTTETSQVQVPVKVGEVMDKGKETAVEVTKTSVEDKARVEAIIRRGLENGKAVVGEEPQTQIGGSVSEILELVAPKKLMIFELKWPTEVPLLELLDIKQALPEVLEEEEEESQTDDQDTDKKKNRGCNIV 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03509 519 PANTHER CYCLINS 24 255 IPR039361 -
Trre11g03509 519 MobiDBLite consensus disorder prediction 295 329 - -
Trre11g03509 519 SUPERFAMILY Cyclin-like 144 261 IPR036915 -
Trre11g03509 519 SMART Cyclin_C_2 167 300 IPR004367 -
Trre11g03509 519 SUPERFAMILY Cyclin-like 35 162 IPR036915 -
Trre11g03509 519 Coils Coil 284 304 - -
Trre11g03509 519 Gene3D - 41 226 - -
Trre11g03509 519 Coils Coil 357 377 - -
Trre11g03509 519 Gene3D - 47 165 - -
Trre11g03509 519 MobiDBLite consensus disorder prediction 363 395 - -
Trre11g03509 519 Pfam Cyclin, N-terminal domain 37 164 IPR006671 -
Trre11g03509 519 MobiDBLite consensus disorder prediction 505 519 - -
Trre11g03509 519 Pfam Cyclin, C-terminal domain 167 296 IPR004367 -
Trre11g03509 519 MobiDBLite consensus disorder prediction 493 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03509 Trre-Chr11 47887188 47890055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03509 36 254 Core Cell Cycle Gene Families AT4G03270 29.565 4.69e-22 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03509 K18812 - tpra:123896488 682.559