Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03500 ATGGCACCCTCACACATGCAAAACTACTACTACAGCACCACTGACGACGACAACGACAACGATGATTTTAACTACAATGTCGTGTACGAGGATGAGGATGAAGATGAGGACGAGTATCAGGAAGACGAAAAAGAAGAAACCGGGGCCAAAACCAAAACCAACAATAACATTGTGTTCAATGGTTCTTCACGTTGTTCATCATTTTCATTGAGTAGAGTATTATTTGACCCGAGAGGAAAATGGGTTGAAGAATGGAACCGGGTATTTCTTTTGGTACATGCGATGGGTTTATTTGTAGACCCATTATTTTTCTACACGTTGTCTATAAGTGACACGTGTATGTGTCTGTTTATTGACGGTTGGTTACTCGTTACCGTCACCGTTATCCGTTGCATGACGGACGCGTTACATCTATGGAATATTTGGTTACAGTTCTATATTGAGAAACGCTCCTCTTTTGGCTTTGTTCATCGTACTCCTCCACCTCGTACTTCAACTTCACATGTTTTTCCTTACTTCAAACCCAACAAAGGATTTTTCTTTGATATCTTTGTCATTCTCCCTCTTCCTCAGATTGTGTTATGGGTGACAATTCCGTCTATGTTAAAAGAAGGATCAATTACAAGCGTGATGGTTGTATTGTTGACTATGTTCCTGTTTCAATACCTTCCTAAAATTTTTCACTCAGTCAATTTCGTGCGTCGCAAACTCTTAGCCGGTTACATTTTTGGAACCATTTGGTGGGGATTCGCTCTCAACATGATCGCTTATTTTGTCGCTTCCCATGCAGCAGGGGCATGTTGGTACTTGTTGGGACTTCAAAGGGGAATGAATTGTCTAGGAGAGCAATGTGAGACAACAACAGGTTGTGGTTTGAGAACAATGTGTTGCAAAGAACCAATATACTATGGAAGCTATAGCATGATGAAGAAATTAGAGAAAACAAGGTTGATATGGGCACAAAACAAAGAAGCAAGGACTACATGTTTAGATAGTGCTGACAACTATGAATATGGAGTTTATGAATGGAGTGTGCAACTATTAACAAATAATAGTCGAATTGAAAAGATACTCCTCCCTATCTTTTGGGGATTAATGACTCTCAGCACTTTTGGGAACCTCCAGAGCACAACAGAAAGGATGGAAACTGTTTTCAATATTATTGTGTTGACCAGTGGCCTCCTTCTAGTCACTATGCTAATTGGAAACATCAAGGTATTTTTACATGCTACAACATCGAAGAAGCGAGAGATGAAATTGAAGATGAAGAACCTTGAATGGATGATGAACAAAAGACGCTTGCCACAAGGGCTCCGACAACGTGTGCGAAACTACGAGAGACAATGTTGGGCTGCGATGCGCGGGGTTGATGAATGCCAATTAATCAAAAACCTCCCTGAGGGTTTGAGAAGGGACATCAAGTACCATCTTTGTTTGGGTTTGGTGAGACAGGTGCCATTATTTCAGCATATGGATGAATTGGTGCTAGAGAACATTTGTGACCGTGTCAAGTCCCTTGTATTCACAAAGGGAGAAACACTAACAAGAGAGGGAGATCCAGTTCAAAGAATGCTATTTGTAGTAAGGGGTCATCTTCAAAGTAGCCAAATCCTAAGAGATGGAGTAAAAAGTTGTTGCATGTTAGGACCAGGAAACTTTAGTGGTGATGAGCTTCTATCATGGTGTTTAAGAAGGCCATTTATACCACGCCTTCCAACATCATCATCAACTTTGGTCACACTTGAAACAACAGAGGTATTTGGACTTGAAGCAGAGGATGTCAAATATGTGACACAACATTTTAGGTACACATTTACAAAGGAAAATGTTAGGAGAAGTGTTAGATATTACTCACCTGGTTGGAGAACTTGGGCTGCTGTGGCAATTCAATTGGCTTGGAGAAGGTATAGACATAGGTTGACTTTGAATTCTTTGTCCTTTATTAGGCCTCGTAGACCTTTGTCAAGGTCCACATCTATGGAAGAAGATAGACTTCGTCTTTATACCGCTTTGTTAACTTCACCAAAGCCTAATCAAGATGATTTTGATTCTTCATAA 2058 0.4043 MAPSHMQNYYYSTTDDDNDNDDFNYNVVYEDEDEDEDEYQEDEKEETGAKTKTNNNIVFNGSSRCSSFSLSRVLFDPRGKWVEEWNRVFLLVHAMGLFVDPLFFYTLSISDTCMCLFIDGWLLVTVTVIRCMTDALHLWNIWLQFYIEKRSSFGFVHRTPPPRTSTSHVFPYFKPNKGFFFDIFVILPLPQIVLWVTIPSMLKEGSITSVMVVLLTMFLFQYLPKIFHSVNFVRRKLLAGYIFGTIWWGFALNMIAYFVASHAAGACWYLLGLQRGMNCLGEQCETTTGCGLRTMCCKEPIYYGSYSMMKKLEKTRLIWAQNKEARTTCLDSADNYEYGVYEWSVQLLTNNSRIEKILLPIFWGLMTLSTFGNLQSTTERMETVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKREMKLKMKNLEWMMNKRRLPQGLRQRVRNYERQCWAAMRGVDECQLIKNLPEGLRRDIKYHLCLGLVRQVPLFQHMDELVLENICDRVKSLVFTKGETLTREGDPVQRMLFVVRGHLQSSQILRDGVKSCCMLGPGNFSGDELLSWCLRRPFIPRLPTSSSTLVTLETTEVFGLEAEDVKYVTQHFRYTFTKENVRRSVRYYSPGWRTWAAVAIQLAWRRYRHRLTLNSLSFIRPRRPLSRSTSMEEDRLRLYTALLTSPKPNQDDFDSS 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03500 685 SUPERFAMILY cAMP-binding domain-like 413 601 IPR018490 -
Trre11g03500 685 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 47 680 - -
Trre11g03500 685 CDD CAP_ED 487 593 IPR000595 -
Trre11g03500 685 Gene3D Jelly Rolls 485 603 IPR014710 -
Trre11g03500 685 ProSiteProfiles cAMP/cGMP binding motif profile. 487 566 IPR000595 -
Trre11g03500 685 MobiDBLite consensus disorder prediction 31 50 - -
Trre11g03500 685 FunFam cyclic nucleotide-gated ion channel 4 485 603 - -
Trre11g03500 685 SUPERFAMILY Voltage-gated potassium channels 76 408 - -
Trre11g03500 685 Gene3D Helix hairpin bin 412 478 - -
Trre11g03500 685 MobiDBLite consensus disorder prediction 1 25 - -
Trre11g03500 685 Pfam Cyclic nucleotide-binding domain 507 595 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03500 Trre-Chr11 47748976 47755996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03500 60 683 Ion Channels AT5G54250 73.693 0.0 958
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03500 K05391 - gmx:100800795 1013.06