Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03499 ATGGCTCCAATGACTCTACCACCTGGATTCAGGTTCCACCCTACAGATGAAGAACTTGTGGCTTACTACTTAGAAAGAAAAATAACAGGTAAAACTATAGAGCTTGATATCATTGCAGAAGTTGATCTCTACAAATGTGAACCTTGGGATTTACCAGAAAAATCATTTCTTCCAAGCAAGGACATGGAGTGGTATTTTTATAGTCCAAGAGATAGAAAGTATCCAAATGGATCGAGAACAAATAGAGCAACAAGAGGTGGTTATTGGAAAGCAACTGGAAAAGATAGGGCAGTGAATTCTCAAAAGAGACATGTTGGAATGAAGAAGACACTTGTTTATTACAAAGGTAGAGCACCTCATGGGATTAGAACCAATTGGGTTATGCATGAATATCGCCTCATGGAATCACATCCTGGTGCTTCTCTCTCTTCTTTAAAGGATTCCTATTCTTTGTGTCGAATTTTCAAGAAGACAATTCAAATTCCAGCAAAAAGTAAAGAACAAGTTGAGGAAACAAAGAAGGAAATGATGTTAGAAGAACAAGTGCAAGGGGAAGACTCAAGTGGCACTGAGAATTCAAGTGAAATAATGGAAACTATGAATATAAAAGTTCTTAATCAAGATGAAAATCCAAAATTTCCATGTGATGCTTCTTCTTCTGATGTCACTCAAGGAACATGTACACCAACAAATACGTGTAATAATATATCAGATGATTTTCATGCACAATTTGCTTGTGATGAAGCAAATAGTTCAGCTATTTCTTATCCAATTGGAATTGGCTACTCCTCAAACTTATTTCAGGATATAGAAATACCTATGTATGGTGCTTTTCATAATCAATTTCCACAAACACCTATGATGGAAGATTTACCACAAATTGAGACAAAGTCAATATTGAAGCATGATATGACTAATGATGACTGCTTTTTGTATGACAAATATAGAGACTGTATGAATGGAACACTAGAAGAAATCATCTCTTTATGTTCCTCTCAAGATCATTCTTTGGCTTTTCCTAAGCTATAG 1029 0.3547 MAPMTLPPGFRFHPTDEELVAYYLERKITGKTIELDIIAEVDLYKCEPWDLPEKSFLPSKDMEWYFYSPRDRKYPNGSRTNRATRGGYWKATGKDRAVNSQKRHVGMKKTLVYYKGRAPHGIRTNWVMHEYRLMESHPGASLSSLKDSYSLCRIFKKTIQIPAKSKEQVEETKKEMMLEEQVQGEDSSGTENSSEIMETMNIKVLNQDENPKFPCDASSSDVTQGTCTPTNTCNNISDDFHAQFACDEANSSAISYPIGIGYSSNLFQDIEIPMYGAFHNQFPQTPMMEDLPQIETKSILKHDMTNDDCFLYDKYRDCMNGTLEEIISLCSSQDHSLAFPKL 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03499 342 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 212 - -
Trre11g03499 342 FunFam Nac domain-containing protein 86 15 160 - -
Trre11g03499 342 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
Trre11g03499 342 Gene3D NAC domain 15 161 IPR036093 GO:0003677|GO:0006355
Trre11g03499 342 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Trre11g03499 342 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03499 Trre-Chr11 47713266 47718844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03499 1 337 NAC Transcription Factor Family AT1G54330 50.147 6.73e-98 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre11g03499 NAM 4.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03499 - - gmx:100808325 530.02