Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03498 ATGGGACATCGTTGTTGCAACAAACAAAAGATCAAAAGAGGATTATGGTCTCCTGAAGAAGATGATAAGCTTCTTACATATATAACTACTCATGGACATAAAAGTTGGAGTTCTGTCCCAAAGTTTGCAGGATTACAGAGATGTGGTAAGAGTTGTAGATTAAGATGGACAAACTATTTGAGGCCAGATCTAAAAAGAGGTTCCTTCACTGTAGAAGAAGAACAAATCATAATTGACATACATAGAATTCTTGGAAACAGATGGGCCCAAATAGCAAAGCATCTACCTGGTAGAACTGACAATGAAGTGAAGAATTTTTGGAACTCTTGTATTAAAAAGAAACTGATTTCCCAAGGCTTAGATCCACAAACTCACAATTTACTTTCATCTTCTTCTCATCATAATAAGAGAAACAACTCATCATCATGCCAAAATTCCAATTCCATTTTCATTCTTAGTTCACAAATGCCACCAAATGCTAATAATCAAACTTTTCCTTCACCAAATATTCTTCAAACTCCCTCCACAATTGTTTCTTCTTACCAATATCAAACATCTTTCAATGTAATTACAAATCAACTTTGTGTTTCCGAGCAAGAACAACCTCGAACATTAACCGAGAACATATCGAACATATGTTCATCTTCTTGCAATGAGAATAGCATTTGGGTTTCAAGAGATGATGATGATTTTAGAGATTCAAGATTTGAAGAAGGAATTCAAGCTCAAGTGGAGAAAGAGAAGGAGAAGATATGTGATGAGAAAAGATTAATGGATGACAAACAACTTATTGAAATGAATAATTGTTTTGAAAATTCTAACTTTGATTTTGGGTTGTTGGAGAGTGTACTTAACTCTGAATTTATATCCCATGATCTAGATTATATGGATGAACTTGCATGGAACTTTTAG 912 0.3388 MGHRCCNKQKIKRGLWSPEEDDKLLTYITTHGHKSWSSVPKFAGLQRCGKSCRLRWTNYLRPDLKRGSFTVEEEQIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGLDPQTHNLLSSSSHHNKRNNSSSCQNSNSIFILSSQMPPNANNQTFPSPNILQTPSTIVSSYQYQTSFNVITNQLCVSEQEQPRTLTENISNICSSSCNENSIWVSRDDDDFRDSRFEEGIQAQVEKEKEKICDEKRLMDDKQLIEMNNCFENSNFDFGLLESVLNSEFISHDLDYMDELAWNF 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03498 303 FunFam MYB transcription factor 5 65 - -
Trre11g03498 303 PANTHER MYB DOMAIN PROTEIN 55 1 238 - -
Trre11g03498 303 CDD SANT 68 108 IPR001005 -
Trre11g03498 303 FunFam Transcription factor MYB86 67 145 - -
Trre11g03498 303 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Trre11g03498 303 SMART sant 12 62 IPR001005 -
Trre11g03498 303 SMART sant 65 113 IPR001005 -
Trre11g03498 303 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Trre11g03498 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Trre11g03498 303 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Trre11g03498 303 CDD SANT 16 60 IPR001005 -
Trre11g03498 303 Gene3D - 10 66 - -
Trre11g03498 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Trre11g03498 303 Pfam Myb-like DNA-binding domain 66 109 IPR001005 -
Trre11g03498 303 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Trre11g03498 303 Gene3D - 67 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03498 Trre-Chr11 47706251 47708173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03498 1 130 MYB Transcription Factor Family AT3G12720 86.923 4.11e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre11g03498 Myb_DNA-binding 5.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03498 K09422 - gmx:100791209 363.614