Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03494 ATGGAAAGAATGTTCCCTCCAAAGAAGCCTTCAACTATGAATTCACATGATAGACCCATGTGTGTTCAAGGTGACTCAGGACTTGTTCTTACCACTGACCCGAAACCTCGTCTTCGATGGACTGTTGAACTCCATGAACGTTTTGTTGATGCTGTTACTCAGCTTGGAGGACCTGATAAGGCCACTCCTAAAACTATCATGAGGGTTATGGGTGTCAAGGGTCTCACCCTTTACCATCTCAAGAGCCATCTTCAGAAATTTAGGCTTGGAAAGCAACCCCACAAGGAATTCAATGATCACTCAATTAAGGATGCTACAGCTTTAGAACTGCAACGAAATACTGCTTCCTCTTCTGCCATGATTGGCCGGAACATGAATGAGATGCAAATTGAGGTGCAGCGAAGACTTCATGAACAGCTTGAGGTGCAAAAACACCTTCAACTAAGGATTGAAGCTCAAGGGAAATACATGCAAAGTATATTGGAGAAGGCTTATCAAACCCTTGCCGGCGAAAACATGGCATCGGCTGCAACTAACCTAAAAGGTGTTGTCGTTGGACCACAAGGAGTATCTGAAATGGGACTATTGAAAGAATTTAGTGCCCCTCTTAGTTTCTCATCTTTTCAAGATCTTGATCTTTTCGGTGGAGGTGGATGTGATCAACTTGACCTTCAACAAAACATGGAAAAACAGACCCTAGATCATCATGGATTTCTGCAAATCAATGAGAATTTATGTCTTGGAAAGAAGAGGCCAAACCCTAACTCTAACCCTTATAGTGGAAATGGAAAGAGTCCTTTAATGTGGAGTAGTGATGATTTAAGGCTTCAAGATTTAGGAACACCTTCATCATGCTTAGATGATCCTTTCAAAGGTGAGCAAATTCAAGTTGCACCACCATCAATGGATAGAGGAAGTGATATTGAAACTATAGATATTTATGATACAAAGCCTTTACTTCAAGGTGATATTTTAAGTGAAAAAAAATTTGATGCAATGAATAAACTTGAGAGGCCATCACCAAGAAGAGGGCCACTTCATGCTGAAAGAATGAGTCCTATGATTAGTACCGGTACTATGGCACAAGGTAGAGGCTCACCATTTGGATGA 1110 0.4117 MERMFPPKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDATALELQRNTASSSAMIGRNMNEMQIEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYQTLAGENMASAATNLKGVVVGPQGVSEMGLLKEFSAPLSFSSFQDLDLFGGGGCDQLDLQQNMEKQTLDHHGFLQINENLCLGKKRPNPNSNPYSGNGKSPLMWSSDDLRLQDLGTPSSCLDDPFKGEQIQVAPPSMDRGSDIETIDIYDTKPLLQGDILSEKKFDAMNKLERPSPRRGPLHAERMSPMISTGTMAQGRGSPFG 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03494 369 Pfam Myb-like DNA-binding domain 38 86 IPR001005 -
Trre11g03494 369 MobiDBLite consensus disorder prediction 333 369 - -
Trre11g03494 369 Gene3D - 34 92 - -
Trre11g03494 369 MobiDBLite consensus disorder prediction 1 20 - -
Trre11g03494 369 FunFam Myb family transcription factor 34 92 - -
Trre11g03494 369 Pfam MYB-CC type transfactor, LHEQLE motif 128 167 IPR025756 -
Trre11g03494 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
Trre11g03494 369 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 219 IPR044848 GO:0003700
Trre11g03494 369 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Trre11g03494 369 NCBIfam myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03494 Trre-Chr11 47591440 47593509 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03494 4 369 G2-like Transcription Factor Family AT1G79430 58.158 9.60e-125 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre11g03494 Myb_DNA-binding 2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03494 - - gmx:100807793 569.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03494 11 47591440 47593509 Trre11g03494 11 47591440 47593509 ECH
Trre11g03494 11 47591440 47593509 Trre15g01697 15 13590694 13593396 PCT