Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03487 ATGACGACGGTGGCACTGAATTTCGGTAGAAGAATGAACACGGCACTCCGATCATCGAACCTTATCTATCGCTCTTCCTCTTCCAATCTTCTCTCCCCTAACTTCCTCATGCAAATTCCCCTCACTCGCAAGATGAGCACGGATGCACAAAGTATTGCCTCCCAGCTTAACAGTTCGGGGCTGTTGAGGACTCAGGGCCTCATTGGAGGGAAATGGCAGGATGCTTATGATGGGAAAACCATAAAGGTTTATAATCCATCAACTGGCGAATCTATAGCAGATGTAGCATGCATGGGTGGAAGGGAAACAAATGATGCAATTTCCTCTGCTTTTGATGCATTTAAATTATGGAGCAAAACCACTGCTGCTGAGCGAAGTAAATATCTGAGAAAATGGTATGATTTGCTCATTGCACACAAAGAAGAGTTAGCACAACTTATAACCTTGGAGCAAGGAAAGCCTCTTAAAGAGTCTCTGGGTGAGATAAATTACAGTGCTGGGTTTATTGAGTTTGCATCAGAGGAGGCAAAACGTATATATGGGGATATAATTCCCGCACCTCAGTCTGATCGACGGTTATTTGTTTTAAAGCAGCCTGTTGGGGTTGTAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACCCGAAAGGTTGGTCCAGCCCTTGCATGTGGATGTACAGTGGTCATAAAGCCCTCTGAACTTACGCCTCTGACTGCTTTAGCTGCAGCTGAACTCTCTATTCAAGCTGGAATTCCTGCGGGTGTTGTGAACGTGGTTATGGGAAATGCTCCTGATATTGGAGATGCTTTAATCGCAAGTCCACAGGTAAGGAAGATTACATTCACTGGCTCGACGGCTGTTGGAAAGAAATTGATGGCTGGTTCTGCCGAGACAGTTAAAAAAGTATCTCTGGAGCTTGGTGGCAACGCACCTTGCATAGTTTTTGATGATGCTGACCTGGATGTTGCAGTGAAAGGAACACTTGCAGCAAAGTTCCGTAATAGCGGACAAACTTGTGTTTGTGCAAATAGAATTCTTGTGCAAGAAGGTATATATGACAAATTTGCAAATGCATTGCTTGATGCTGTTCAGAGCATGAAAGTTGGAGATGGTTTTAGTGAAGGTGTAGCTCAGGGACCTCTGATCAATGAAGCTGCTGTCAAAAAGGTTGACTCCTTGATTCATGATGCTACATCAAAGGGGGCAAAAGTAATTCTTGGGGGTAAAAGACATAGCCTTGGATCAACTTTTTATGAACCAACAGTCATCACTGATGTCGACAATGACATGCTTATATCAAGACAGGAAGCATTTGGACCTGTCGCACCCCTTTTGAGATTCAAAACTGAAGAGGATGCTATCAGAATTGCTAATGACACCAATGCAGGCTTGGGTTCATACGTATTTACAAACAGTATCCAACGATCATGGCGTGTGGCCGAGGCTCTTGAATATGGACTTGTAGGTGTTAATGAAGGAGTAATTTCAACAGAGGTGGCTCCATTTGGTGGAGTTAAACAGTCTGGTCTCGGAAGAGAAGGTTCCAAATATGGGATGGATGAATATTTGGAGATCAAGTATGTTTGCTTGGGAAACATGAACAAAGATTGA 1620 0.4364 MTTVALNFGRRMNTALRSSNLIYRSSSSNLLSPNFLMQIPLTRKMSTDAQSIASQLNSSGLLRTQGLIGGKWQDAYDGKTIKVYNPSTGESIADVACMGGRETNDAISSAFDAFKLWSKTTAAERSKYLRKWYDLLIAHKEELAQLITLEQGKPLKESLGEINYSAGFIEFASEEAKRIYGDIIPAPQSDRRLFVLKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELSIQAGIPAGVVNVVMGNAPDIGDALIASPQVRKITFTGSTAVGKKLMAGSAETVKKVSLELGGNAPCIVFDDADLDVAVKGTLAAKFRNSGQTCVCANRILVQEGIYDKFANALLDAVQSMKVGDGFSEGVAQGPLINEAAVKKVDSLIHDATSKGAKVILGGKRHSLGSTFYEPTVITDVDNDMLISRQEAFGPVAPLLRFKTEEDAIRIANDTNAGLGSYVFTNSIQRSWRVAEALEYGLVGVNEGVISTEVAPFGGVKQSGLGREGSKYGMDEYLEIKYVCLGNMNKD 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03487 539 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 58 536 - -
Trre11g03487 539 SUPERFAMILY ALDH-like 59 537 IPR016161 GO:0016491
Trre11g03487 539 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 335 346 IPR016160 GO:0016491
Trre11g03487 539 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 307 314 IPR029510 GO:0016491
Trre11g03487 539 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 311 500 IPR016163 GO:0016620
Trre11g03487 539 Pfam Aldehyde dehydrogenase family 72 531 IPR015590 GO:0016491
Trre11g03487 539 FunFam Succinate-semialdehyde dehydrogenase I 311 500 - -
Trre11g03487 539 NCBIfam succinate-semialdehyde dehydrogenase 83 529 IPR010102 GO:0009013|GO:0009450
Trre11g03487 539 CDD ALDH_F5_SSADH_GabD 83 533 - -
Trre11g03487 539 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 78 525 IPR016162 GO:0016491
Trre11g03487 539 FunFam Aldehyde dehydrogenase, putative 503 529 - -
Trre11g03487 539 FunFam Succinate-semialdehyde dehydrogenase I 78 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03487 Trre-Chr11 47513783 47525951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03487 43 538 Aldehyde Dehydrogenase Gene Family AT1G79440 80.040 0.0 818
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03487 K17761 - gmx:100808318 915.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03487 11 47513783 47525951 Trre11g03487 11 47513783 47525951 ECH