Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03486 ATGGCGTCTTCCAGCGCAGCAGCAGCAGCTGCTGGATCTGCCGATTCCACTGCCTCTAGAAGAAACACCAAACGACCTAAGTATTCGAAGTTTACTCAGCAAGAGCTTCCTGCATGTAAACCGATTCTCACTCCTCGAGCGGTAATTTCAGCATTCTTGCTTGTCAGTGTTGTGTTTATTCCTATTGGTGTTGCTTCCCTAATGGCTTCAAGAAAGGTTGTCGAAATTGTTTATAGGTATGATTCATTGTGCTTACCAAATGTTACCAACAAGCTAGCGTACATTCAGAATCCTACAACAAATAAAACGTGCCACGCAACACTAAATGTTACCAAGCACATGAAGTCACCTATTTATGTATACTATCAACTGGACAACTTTTACCAGAATCATCGCCGGTATGTTAAAAGCCGAAGTGATGAGCAATTGAGGAATCCCAAGGATGCGAGCTCAACAAGTACTTGTAAGCCTGAAGAATCTGCCAATAATAACACAATTGTGCCGTGTGGTCTCATAGCTTGGAGTTTATTCAATGACACATACAGCTTCTCCGTCAACAAAACAAAATTGACGGTGAACAAAAGAGGCATCTCCTGGAAGAGTGATAGGGAGCATAAATTTGGAAAAGATGTTTTCCCCAAAAACTTCCAGAATAGTTCTATAATTGGTGGTGCCCATCTTAATGAATCCATACCATTGAATGAGCAGGAGGATCTCATTGTCTGGATGAGAACCGCTGCATTGCCAACTTTTCGGAAGCTATATGGAAAGATAGAGTTGGATCTGAATGCAGGGGACATCATAAATGTAACACTTCAAAATAACTATAACACATACAGTTTCAATGGCAAGAAAAAACTCGTTCTGTCAACTACTAGCTGGCTAGGTGGGAAGAATGACTTCCTTGGAATTGCTTATCTCACCGTTGGAGGATTATGCTTCTTTTTATCTTTGGCTTTTACCATTGTATATTTTGTCAAGCCAAGGCAACTTGGTGATCCCTCATATCTGTCATGGAACAGAAACCCAGGAGGCCACTAA 1041 0.414 MASSSAAAAAAGSADSTASRRNTKRPKYSKFTQQELPACKPILTPRAVISAFLLVSVVFIPIGVASLMASRKVVEIVYRYDSLCLPNVTNKLAYIQNPTTNKTCHATLNVTKHMKSPIYVYYQLDNFYQNHRRYVKSRSDEQLRNPKDASSTSTCKPEESANNNTIVPCGLIAWSLFNDTYSFSVNKTKLTVNKRGISWKSDREHKFGKDVFPKNFQNSSIIGGAHLNESIPLNEQEDLIVWMRTAALPTFRKLYGKIELDLNAGDIINVTLQNNYNTYSFNGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLSLAFTIVYFVKPRQLGDPSYLSWNRNPGGH 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03486 346 MobiDBLite consensus disorder prediction 146 160 - -
Trre11g03486 346 PANTHER CELL CYCLE CONTROL PROTEIN 50 20 339 IPR005045 GO:0016020
Trre11g03486 346 MobiDBLite consensus disorder prediction 137 160 - -
Trre11g03486 346 Pfam LEM3 (ligand-effect modulator 3) family / CDC50 family 67 330 IPR005045 GO:0016020
Trre11g03486 346 PIRSF Lem3/Cdc50 1 342 IPR005045 GO:0016020
Trre11g03486 346 MobiDBLite consensus disorder prediction 1 30 - -
Trre11g03486 346 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03486 Trre-Chr11 47500971 47505207 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03486 K26935 - gmx:100806200 583.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03486 11 47500971 47505207 Trre11g03486 11 47500971 47505207 ECH
Trre11g03486 11 47500971 47505207 Trre15g01703 15 13605900 13609164 PCT