Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03477 ATGGCTGAGAGTGGTGGCGGCAGAAGTGAACCTTTTATTGATCAAGAAGTTGCAAATGGTTCTTGGAGACTCAATGTCAAAGAGTTTCATCTACCAACACAAAATAATGTTGTTGATCATCAAAACAAATCTTCTTTTAGTTTCAATGGCCTTCTTCGTAAGCCTAGGAAACAACGCAAGGTGGCGGAGTATTACAAGAAACAAGAGAGACTTCTTGAAGGTTTTAATGAAATGGAGACTATGCATGAAACTGGTTTTTTCCCCGGAGGTCTCACTGAGGATGAAATGAAGCAACTTGCAAAGAGTGAGAGGATGGCAGTTCATATCTCAAATGCATGCAACTTGGTGCTGTTTGCTGCAAAGGTTTTCGCGTCAATTGAGAGTAGATCATTAGCTGTCATTGCATCGACACTAGATTCTCTTTTGGACCTTTTGTCAGGTTTTATATTGTGGTTTACTTCTCATGCCATGAGAAAGCCAAATCGTTATCACTATCCGATTGGAAAGAAACGCATGCAACCAGTGGGTATCATTGTTTTTGCATCCGTGATGGCAACTTTGGGTTTGCAGATTTTGATTGAGTCGGGTCGGCAAATTATTGCAAAGGCTAAGCCTGAAATGGATCCAATAAAGGTGAATTGGATGATCGGGATTATGGTATTCGTGACTGTAGTGAAGTTCATTCTTATGGTCTACTGTCGAAGATTTAAAAATGAAATCATCAGAGCGTACGCACAAGATCATTTATTCGATGTCATTACTAATTCCGTCGGATTAGCCGCTGCTGTTCTAGCTGTCAAGTTCTACTGGTGGATTGATCCAACAGGAGCTATTGTTATTGCATTATATACAATCAACACATGGACAAAGACAGTGATTGAGAATGTTTGGTCACTAATCGGAAGAACAGCACCACCCGATTTCTTGGCAAAGTTAACATACCTTATATGGAACCACCATGAACAAATCAAACACATTGATACAGTTAGAGCATACACATTTGGTGCACATTACTTTGTGGAAGTTGACATTGTTTTGCCAGAAGATATGCTTCTTAACCAAGCACACAACATTGGTGAAACACTTCAAGAGAAGCTAGAACAACTTCCAGAAGTTGAAAGAGCTTTTGTTCACATTGATTTTGAGTTCACTCATAGACCTGAGCATAAGACATCAGTATGA 1182 0.3968 MAESGGGRSEPFIDQEVANGSWRLNVKEFHLPTQNNVVDHQNKSSFSFNGLLRKPRKQRKVAEYYKKQERLLEGFNEMETMHETGFFPGGLTEDEMKQLAKSERMAVHISNACNLVLFAAKVFASIESRSLAVIASTLDSLLDLLSGFILWFTSHAMRKPNRYHYPIGKKRMQPVGIIVFASVMATLGLQILIESGRQIIAKAKPEMDPIKVNWMIGIMVFVTVVKFILMVYCRRFKNEIIRAYAQDHLFDVITNSVGLAAAVLAVKFYWWIDPTGAIVIALYTINTWTKTVIENVWSLIGRTAPPDFLAKLTYLIWNHHEQIKHIDTVRAYTFGAHYFVEVDIVLPEDMLLNQAHNIGETLQEKLEQLPEVERAFVHIDFEFTHRPEHKTSV 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03477 393 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 304 380 IPR036837 -
Trre11g03477 393 Gene3D Cation efflux protein transmembrane domain 104 299 IPR027469 -
Trre11g03477 393 Gene3D Cation efflux protein, cytoplasmic domain 304 381 IPR036837 -
Trre11g03477 393 Pfam Dimerisation domain of Zinc Transporter 306 380 IPR027470 -
Trre11g03477 393 SUPERFAMILY Cation efflux protein transmembrane domain-like 102 301 IPR027469 -
Trre11g03477 393 Pfam Cation efflux family 109 299 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Trre11g03477 393 NCBIfam cation diffusion facilitator family transporter 106 380 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Trre11g03477 393 PANTHER MITOCHONDRIAL METAL TRANSPORTER 1-RELATED 18 390 - -
Trre11g03477 393 FunFam Metal tolerance protein 11 106 299 - -
Trre11g03477 393 FunFam Metal tolerance protein 11 302 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03477 Trre-Chr11 47361505 47365611 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03477 - - gmx:100797536 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03477 11 47361505 47365611 Trre11g03477 11 47361505 47365611 ECH
Trre11g03477 11 47361505 47365611 Trre15g01711 15 13667104 13670238 PCT