Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03457 ATGGAGCAACCACAACACTTAGTAGAACAAAACTTCCCACTCTTCAAACCATCACGCAAACCCTCCTCAACAAACCCTTCATTCTCCACTTCCATTCTCACCAAACCTAATCCCCAAACCCAAACCCCTCAAAACGACGTCGTTACTCATGAAAACCCTACCTCCAACCCCGAAAACACCGCCACAACCACCTTCTCCGATCTCGGCCTCTCCCAATGGGCGGTCAAAACATGCAAAGAGCTTGGAATGAAATTTCCACGTCGCGTCCAACAGTACTGCATCCCGAAGATTCTAGAAGGTCGTCATGTGATTGGAATTGATGAGACTGGTAGCGGTAAAACGGCGGCGTTTGCTCTTCCGATTCTTCAGCGACTAGCTGAGCATTTGTTTGGTGTGTTTGCTCTTGTGGTGACGCCGACTCGTGAGCTTGCGTTTCAGTTGGAGGAGCAGTTTCTTGCTCTTGGATCATCGATTGGTCTCCGAACTTTGGTGGTTGTTGGTGGTAGGGATATGCTTACACAGACGAAGGAGTTGGTTGCTAGGCCTCATCTTGTTATTGCTACTCCTGGGAGGATTAAGGTTTTGCTTAAGGATAATCCTGAAATTGCTCCTGTTTTCGCTAGGACTAAGTTTCTTGTTTTGGATGAAGCAGATCGAGTCTTGGATGTTGGGTTTCAGGAGGAATTGAAATTTATCTTTCAGTGCTTACCAGAAAACCGCCAAAATCTATTCTTTTCTGCAACCACGACTAGTAATCTGCAAAAGTTGCGTGAGCGTTATCAAGATAAGCTGTATGCCTTCGAGGCTTATGAAGGGTTTAAGACAGTTGAGAAGCTCACTCAACAAGTTGTATTCATCCCTAAAAAGGTGAAGGATGTATATTTGTTGCATATCTTGTCTAAAATGAAAGATATGGGTATTCGTTCTGCAATTGTCTTCGTCTCTACTTGCAGAGATTGTCATCGTTTAAATTTAATGTTGGAAGTGCTTGATCAAGAAGCTGCAGCTCTATATTCATTCAGATCACAGTCTCAGAGGCTTGAAGCACTTCAAGAATTTAAATCTGGAAAGGTTCCTATATTACTTGCAACTGATGTTGCTGGTCGTGGTTTGGATATTCCTACAGTGGACCTTGTTATCAATTATGATGTTCCAAGGTTTCCACGAGATTATATCCACCGTGTAGGTCGTACTGCAAGAGCAGGTAGAGGGGGACTCGCTTTGAGCCTAGTCACTCAGAATGATGTTGATCTCATTCGTGAAATAGAGGCCCTTATTGAAAGGAAACTTGAAATGATTGAATACAAAGAAAATGAGGTGCTTTCACTCATGAAAAAGGTTTTCACTGCTAATAATGTTGCAAAAATGAAGATGATGGATGACGGCTTTGAAGAGAAAGCTAAAGAGCGGAAAAAACAGAAACTGAAAATGCTAGAAGAGAAAGGATTATTAAAGCAAAGAAGTAAGAGAAAAAGAAATAAAGAATTTGCAGAGAAAGGAAATAAACCGGGAAAAGTGGAAGTAGATGCATTATCAAATATAGCATCTCCAAAAAAGAAGATTAAGAAGAGAAAGTAA 1578 0.417 MEQPQHLVEQNFPLFKPSRKPSSTNPSFSTSILTKPNPQTQTPQNDVVTHENPTSNPENTATTTFSDLGLSQWAVKTCKELGMKFPRRVQQYCIPKILEGRHVIGIDETGSGKTAAFALPILQRLAEHLFGVFALVVTPTRELAFQLEEQFLALGSSIGLRTLVVVGGRDMLTQTKELVARPHLVIATPGRIKVLLKDNPEIAPVFARTKFLVLDEADRVLDVGFQEELKFIFQCLPENRQNLFFSATTTSNLQKLRERYQDKLYAFEAYEGFKTVEKLTQQVVFIPKKVKDVYLLHILSKMKDMGIRSAIVFVSTCRDCHRLNLMLEVLDQEAAALYSFRSQSQRLEALQEFKSGKVPILLATDVAGRGLDIPTVDLVINYDVPRFPRDYIHRVGRTARAGRGGLALSLVTQNDVDLIREIEALIERKLEMIEYKENEVLSLMKKVFTANNVAKMKMMDDGFEEKAKERKKQKLKMLEEKGLLKQRSKRKRNKEFAEKGNKPGKVEVDALSNIASPKKKIKKRK 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03457 525 CDD SF2_C_DEAD 279 411 - -
Trre11g03457 525 MobiDBLite consensus disorder prediction 470 525 - -
Trre11g03457 525 Gene3D - 274 521 IPR027417 -
Trre11g03457 525 Coils Coil 419 439 - -
Trre11g03457 525 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 53 503 - -
Trre11g03457 525 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 213 221 IPR000629 -
Trre11g03457 525 SMART helicmild6 321 402 IPR001650 -
Trre11g03457 525 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 131 422 IPR027417 -
Trre11g03457 525 SMART ultradead3 82 282 IPR014001 -
Trre11g03457 525 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 294 441 IPR001650 -
Trre11g03457 525 MobiDBLite consensus disorder prediction 470 505 - -
Trre11g03457 525 Pfam Helicase conserved C-terminal domain 305 402 IPR001650 -
Trre11g03457 525 Gene3D - 33 266 IPR027417 -
Trre11g03457 525 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 94 267 IPR014001 -
Trre11g03457 525 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 63 91 IPR014014 GO:0003724
Trre11g03457 525 MobiDBLite consensus disorder prediction 16 62 - -
Trre11g03457 525 MobiDBLite consensus disorder prediction 1 62 - -
Trre11g03457 525 Pfam DEAD/DEAH box helicase 88 256 IPR011545 GO:0003676|GO:0005524
Trre11g03457 525 CDD DEADc_DDX49 65 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03457 Trre-Chr11 46958229 46964003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03457 45 415 Eukaryotic Initiation Factors Gene Family AT3G13920 32.527 7.50e-54 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03457 K14778 - gmx:100804060 728.398