Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03429 ATGAATGAAATTTTCCCAAATGAACAAGATTTCAACACTTACCTTCCATGTGCAAAACGACAAAAGCTATGTTCAGAGGAGAAAAAAGTAGAACAACAACAACAAGAAGAGCTTTTGAACTCAACCAATTTTTTTGTGGATGAGTTTATAACTAACCCTTTTGTTTCCTTTGAAGCAGAACAACCATTTTGTTCTGCTTCAAAAAAAATTACTGTTGTTGGTTGCGAGAAGAAAGTGAATGAAAAGATTATCTCGCCGCAGAGTATTGCGGCGAGAGAAAGAAGAAGAAAAATAACTGAGAAGACACAAGAGCTTGGAAAGTTGGTTCCTGGTGGACCTAAGATGAACACAGCAGAGATGCTTAATGCTGCTGCTAATTATGTTAAGTTTCTTCAAGCTCAAGTTGGAATGCTTCAAGTTATGGGAACATTAAGCAAGGAAGAAAAGGAACCTCCTCCAAGTCAAGATCTACACAAACTACTTATTTCTCCCTTTGTTCAAGAGAAATTGTATTTGGAAGAAAAGTGCTTTGTTACAAAAGAGTTTGTCACCACACTAACCAATCATGATGATGTTAGATCAAAACCTACCATCCTTAAGGATCTTAAACAGCTTATTGGAATAGAGAATAATGAGAAAAAACCAAAGCAAGAATAA 657 0.3577 MNEIFPNEQDFNTYLPCAKRQKLCSEEKKVEQQQQEELLNSTNFFVDEFITNPFVSFEAEQPFCSASKKITVVGCEKKVNEKIISPQSIAARERRRKITEKTQELGKLVPGGPKMNTAEMLNAAANYVKFLQAQVGMLQVMGTLSKEEKEPPPSQDLHKLLISPFVQEKLYLEEKCFVTKEFVTTLTNHDDVRSKPTILKDLKQLIGIENNEKKPKQE 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03429 218 Pfam Helix-loop-helix DNA-binding domain 90 132 IPR011598 GO:0046983
Trre11g03429 218 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 85 141 IPR036638 GO:0046983
Trre11g03429 218 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 30 183 IPR045843 GO:0003700|GO:0006355
Trre11g03429 218 Gene3D - 85 150 IPR036638 GO:0046983
Trre11g03429 218 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 82 131 IPR011598 GO:0046983
Trre11g03429 218 SMART finulus 88 137 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03429 Trre-Chr11 46764188 46766339 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03429 2 207 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G34820 42.180 1.99e-28 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre11g03429 HLH 2.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03429 - - tpra:123914583 356.681