Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03428 ATGGGAGCACTTAGCACATACTATAACTATAATTGTTACCCTTATCAACCTCTTCAAACTAACACCAACTCAGAAATAATCACTTTTCAACATCATGAACAAGAACAACAGTTATTACTACCTGAATTATCACAAATTTCAGAACCTAACCACCATTTTTCTTCTTCTTATTTAGATGAAACTTTGTTTTTTCAAAGTCCTTATTTTTACTCAAATGAGACTTACCCTTTTCATGATGAACTGTTTCTTGACTCAACTTTCTCTTCTCAAAATGATGGCTTCATTTCAATGAATGAAATTTTCCCAAATGAACAAGATTTCAACACTTACCTTCCATGTGCAAAACGACAAAAGCTATGTTCAGAGGAGAAAAAAGTAGAACAACAACAACAAGAAGAGCTTTTGAACTCAACCAATTTTTTTGTGGATGAGTTTATAACTAACCCTTTTGTTTCCTTTGAAGCAGAACAACCATTTTGTTCTGCTTCAAAAAAAATTACTGTTGTTGGTTGCGAGAAGAAAGTGAATGAAAAGATTATCTCGCCGCAGAGTATTGCGGCGAGAGAAAGAAGAAGAAAAATAACTGAGAAGACACAAGAGCTTGGAAAGTTGGTTCCTGGTGGACCTAAGATGAACACAGCAGAGATGCTTAATGCTGCTGCTAATTATGTTAAGTTTCTTCAAGCTCAAGTTGGAATGCTTCAAGTTATGGGAACATTAAGCAAGGAAGAAAAGGAACCTCCTCCAAGTCAAGATCTACACAAACTACTTATTTCTCCCTTTGTTCAAGAGAAATTGTATTTGGAAGAAAAGTGCTTTGTTACAAAAGAGTTTGTCACCACACTAACCAATCATGATGATGTTAGATCAAAACCTACCATCCTTAAGGATCTTAAACAGCTTATTGGAATAGAGAATAATGAGAAAAAACCAAAGCAAGAATAA 945 0.345 MGALSTYYNYNCYPYQPLQTNTNSEIITFQHHEQEQQLLLPELSQISEPNHHFSSSYLDETLFFQSPYFYSNETYPFHDELFLDSTFSSQNDGFISMNEIFPNEQDFNTYLPCAKRQKLCSEEKKVEQQQQEELLNSTNFFVDEFITNPFVSFEAEQPFCSASKKITVVGCEKKVNEKIISPQSIAARERRRKITEKTQELGKLVPGGPKMNTAEMLNAAANYVKFLQAQVGMLQVMGTLSKEEKEPPPSQDLHKLLISPFVQEKLYLEEKCFVTKEFVTTLTNHDDVRSKPTILKDLKQLIGIENNEKKPKQE 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03428 314 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 46 279 IPR045843 GO:0003700|GO:0006355
Trre11g03428 314 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 181 236 IPR036638 GO:0046983
Trre11g03428 314 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 178 227 IPR011598 GO:0046983
Trre11g03428 314 Pfam Helix-loop-helix DNA-binding domain 186 228 IPR011598 GO:0046983
Trre11g03428 314 Gene3D - 181 246 IPR036638 GO:0046983
Trre11g03428 314 SMART finulus 184 233 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03428 Trre-Chr11 46764188 46766627 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03428 138 303 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 43.452 6.69e-28 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre11g03428 HLH 4.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03428 - - tpra:123914583 493.041