Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03421 ATGTCACATTCACCAGAAAAACCCGAGTCAGAAAAGCCCGAACCGGAGTTAGAATCTTTTTCCGATCGGTTTCGTGAAACGGTGAGTTTAGAAGCAAACAAACCGGATTTCAGAGAACTCGATCTAGGTTCACCGGTTTCACCATTGAGGACACGTGGAGGACCGTCGGTGAGTAGTAGTTCTGGTTCTTCTGGATCTTTCTCTGGTCGAAATGGGTCAAACCCGGTTTCTAAAAGATCCGATTCAGCACCGAATAACAATAACAGTAACTCCGGTGAACTTTCCGGTTCTAGTGAGAACAGTCCAACCACCGAGAGATCTGGTGGGAATGTAAGAGGTTCTAAACCGGGTCATTCAAGATCCAATTCAGGATCCGGTTTGACTCTGTTGACACATTCGGGTCAAACTGTGAACTCTCCGCCGTTGAATGTTCTTCCTACCGGAAACATTTGTCCTTCCGGTAGGATCTTGAAGACCGGTATGACCGTACCAAATCGGAGTTCAAGAAGTGATGTTCTTGGTTCTGGAACTGGGAACTATGGTCATGGTAGCATAATGCGTGGTGGCGGTGCCGGAGTTGTTTCTGGTAAAGGTGAGAGTAACAGTTTGAGAAATAGCATTGGGGGTGATTTAGGAAAAAGAGGGGTGCAGGGTGTGGATCCAGAAGAGCTTAAGAAAGCAGGGAATGAGCATTACAAAAAGGGTCATTTTTCAGATGCATTGAGTCTTTATGACCGTGCAATTTCCTTGTCGCCGACGAGTGCTTCTTATCGTAGCAATCGTGCCGCGGCCCTGACCGGTTTAGGGAGGTTAGCTGAAGCTGTTAAGGAATGCCAAGAGGCTGTTAGATTGGATCCTAATTATTCTAGAGCTCATCATCGTTTGGCTTCACTTTTCATCCGGTTAGGACAAGTTGAGAATGCTAGGAAGCATCTTTGTCATCCTAGATTGACGCCAGATCCGGCGGAGATGCAAAAGTTGAAAATGGTGGAAAAGCATATTAATAAATGTGCAGATGTTAGGAGAGTAGGAGATTGGAAAAGTGTTTTGAGGGAACTTGATGCTGCTGTTGCTGCTGGAGCCGATTCGTCTCCTCAGCTCTTTATGTGTAGAGCAGAAGCCCTATTGAAACTCCATCAAATTGATGATGCAGAATCAGTTTTGTCACGTGTTCCGAAATCGGAGCCACGTGCTAATAGTAATAATACATCTTCTCAAGTAAGATTTTTCGGGATGCTGTCTGAAGCTTATTCCTATTTTGTCAGAGCTCAGATTGAGATGGCATTGGGAAGGTTTGAGAATGCAGTCACGGCTGCTGAGAAGGCGAATCAGATTGATTCCCGAAATATTGAAGTTTCTGTTTTGCTTAACAATGTAAGGATGGTGGCAAGAGCTCGAGTTCGTGGCAATGATCTTTTTAAATCGGAACGGTTCACTGAAGCTTGCTCTGCATACGGGGAAGGTTTGAGATTGGACCCTTCAAATTCTGTTCTATATTGTAATAGAGCAGCGTGTTGGTTTAAGCTTGGTCAATGGGAAAAATCAATTGAAGACTCTAATCAAGCTTTGCATATCCAACCAAATTATACAAAAGCTCTTCTTCGAAGGGCTACATCAAACAGCAAGCTAGAAAGGTGGGAAGAAGCGGTTAAAGATTATGAGGTCTTGCGAAAAGACCTTCCAAATGACAATGCGGTTGCTGAAGCTCTTTTTCATGCACAAGTTGCGCTTAAGAAATCTCGTGGAGAAGAAGTATCGAATTTAAAGTTCGGCGGTGAAGTGGAAGTAGTATCAGGTCTTGAGCAGTTTAGAACTGCAATATCTTTACCCGGTGTTTCTGTTGTCCATTTTGAAGTTGCATCAAATTCGCAATGCAAGCAAATATCACCATTTGTGGATACACTATGTAGTCGATATCCATCTATTAACTTCCTCAAGGTGGACATTCAAGAAAACCCGACAGTTGCAACTGCTGAGAATGTTAGAATCGTGCCAACCTTCAAGATATACAAAAACGGAAGCCGTGTGAAGGAAATCATATGCCCTAGTCGTGACATGTTGGAACACTCTGTGAGGCATTACAGCATTTAG 2091 0.4381 MSHSPEKPESEKPEPELESFSDRFRETVSLEANKPDFRELDLGSPVSPLRTRGGPSVSSSSGSSGSFSGRNGSNPVSKRSDSAPNNNNSNSGELSGSSENSPTTERSGGNVRGSKPGHSRSNSGSGLTLLTHSGQTVNSPPLNVLPTGNICPSGRILKTGMTVPNRSSRSDVLGSGTGNYGHGSIMRGGGAGVVSGKGESNSLRNSIGGDLGKRGVQGVDPEELKKAGNEHYKKGHFSDALSLYDRAISLSPTSASYRSNRAAALTGLGRLAEAVKECQEAVRLDPNYSRAHHRLASLFIRLGQVENARKHLCHPRLTPDPAEMQKLKMVEKHINKCADVRRVGDWKSVLRELDAAVAAGADSSPQLFMCRAEALLKLHQIDDAESVLSRVPKSEPRANSNNTSSQVRFFGMLSEAYSYFVRAQIEMALGRFENAVTAAEKANQIDSRNIEVSVLLNNVRMVARARVRGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWEKSIEDSNQALHIQPNYTKALLRRATSNSKLERWEEAVKDYEVLRKDLPNDNAVAEALFHAQVALKKSRGEEVSNLKFGGEVEVVSGLEQFRTAISLPGVSVVHFEVASNSQCKQISPFVDTLCSRYPSINFLKVDIQENPTVATAENVRIVPTFKIYKNGSRVKEIICPSRDMLEHSVRHYSI 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03421 696 CDD TRX_family 601 688 - -
Trre11g03421 696 ProSiteProfiles TPR repeat profile. 221 254 IPR019734 GO:0005515
Trre11g03421 696 Gene3D Glutaredoxin 589 695 - -
Trre11g03421 696 FunFam TPR repeat-containing thioredoxin TTL4 588 695 - -
Trre11g03421 696 Pfam Tetratricopeptide repeat 417 447 IPR019734 GO:0005515
Trre11g03421 696 SUPERFAMILY Thioredoxin-like 499 694 IPR036249 -
Trre11g03421 696 Pfam Tetratricopeptide repeat 227 288 - -
Trre11g03421 696 ProSiteProfiles TPR repeat profile. 496 529 IPR019734 GO:0005515
Trre11g03421 696 MobiDBLite consensus disorder prediction 1 179 - -
Trre11g03421 696 Gene3D Tetratricopeptide repeat domain 219 582 IPR011990 GO:0005515
Trre11g03421 696 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 26 693 IPR044534 -
Trre11g03421 696 MobiDBLite consensus disorder prediction 51 146 - -
Trre11g03421 696 MobiDBLite consensus disorder prediction 1 38 - -
Trre11g03421 696 Pfam Tetratricopeptide repeat 532 562 IPR019734 GO:0005515
Trre11g03421 696 SUPERFAMILY TPR-like 329 459 IPR011990 GO:0005515
Trre11g03421 696 MobiDBLite consensus disorder prediction 160 177 - -
Trre11g03421 696 SMART tpr_5 221 254 IPR019734 GO:0005515
Trre11g03421 696 SMART tpr_5 416 449 IPR019734 GO:0005515
Trre11g03421 696 SMART tpr_5 462 495 IPR019734 GO:0005515
Trre11g03421 696 SMART tpr_5 365 398 IPR019734 GO:0005515
Trre11g03421 696 SMART tpr_5 530 563 IPR019734 GO:0005515
Trre11g03421 696 SMART tpr_5 255 288 IPR019734 GO:0005515
Trre11g03421 696 SMART tpr_5 496 529 IPR019734 GO:0005515
Trre11g03421 696 Pfam Thioredoxin 601 684 IPR013766 -
Trre11g03421 696 SUPERFAMILY TPR-like 220 554 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03421 Trre-Chr11 46647890 46650939 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03421 461 606 U-box Gene Family AT3G07370 28.962 4.43e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03421 - - gmx:100795358 1005.36